Basic Information:

  VIRBase ID:  

VHID00106115

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          FFAR4:  NM_001195755     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	FFAR4
miRBase Accession/Entrez ID	MIMAT0012597	338557
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BMIQ10//GPR120//GPR129//GT01//O3FAR1//PGR4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FFAR4	chr10:95344727(+) A-I      intronic chr10:95343052(+) A-I      intronic chr10:95347571(+) A-I      3'UTR chr10:95348499(+) A-I      3'UTR chr10:95337508(+) A-I      intronic chr10:95348543(+) A-I      3'UTR chr10:95337516(+) A-I      intronic chr10:95348582(+) A-I      3'UTR chr10:95348521(+) A-I      3'UTR chr10:95345633(+) A-I      intronic chr10:95348507(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FFAR4	chr10:95326450-95326451(+) m6A 5'UTR       24981863 chr10:95347163-95347164(+) m6A CDS//intron       24981863 chr10:95347229-95347230(+) m6A CDS//intron       24981863 chr10:95347322-95347323(+) m6A CDS//intron       24981863 chr10:95347419-95347420(+) m6A 3'UTR//intron       24981863 chr10:95347472-95347473(+) m6A 3'UTR//intron       24981863 chr10:95347486-95347487(+) m6A 3'UTR//intron       24981863 chr10:95348719-95348720(+) m6A 3'UTR//intron       24981863 chr10:95348794-95348795(+) m6A 3'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FFAR4	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: FFAR4

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg