Basic Information:

  VIRBase ID:  

VHID00106103

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          GPRIN3:  NM_198281     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	GPRIN3
miRBase Accession/Entrez ID	MIMAT0012597	285513
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GRIN3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPRIN3	chr4:90194823(-) A-I      intronic chr4:90179556(-) A-I      intronic chr4:90179563(-) A-I      intronic chr4:90194681(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPRIN3	chr4:90158891-90158892(-) m6A 3'UTR       24981863 chr4:90158936-90158937(-) m6A 3'UTR       24981863 chr4:90158947-90158948(-) m6A 3'UTR       24981863 chr4:90163444-90163445(-) m6A 3'UTR       24981863//22608085 chr4:90163539-90163540(-) m6A 3'UTR       24981863//26404942//22608085 chr4:90163563-90163564(-) m6A 3'UTR       24981863//26404942//22608085 chr4:90163570-90163571(-) m6A 3'UTR       24981863//26404942//22608085 chr4:90163603-90163604(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr4:90163610-90163611(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr4:90163734-90163735(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr4:90163796-90163797(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr4:90163910-90163911(-) m6A 3'UTR       24981863//22608085 chr4:90163946-90163947(-) m6A 3'UTR       24981863//22608085 chr4:90164013-90164014(-) m6A 3'UTR       24981863//27773535//22608085 chr4:90164034-90164035(-) m6A 3'UTR       24981863//27773535//22608085 chr4:90164080-90164081(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr4:90164091-90164092(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr4:90164172-90164173(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr4:90164187-90164188(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr4:90164280-90164281(-) m6A 3'UTR       24981863//26404942//27773535//27371828//22608085 chr4:90164333-90164334(-) m6A 3'UTR       24981863//26404942//27371828//22608085 chr4:90164358-90164359(-) m6A 3'UTR       24981863//26404942//27371828//22608085 chr4:90164372-90164373(-) m6A 3'UTR       24981863//26404942//27371828//22608085 chr4:90164416-90164417(-) m6A 3'UTR       24981863//26404942//22608085 chr4:90164450-90164451(-) m6A 3'UTR       24981863//27773535//22608085 chr4:90164767-90164768(-) m6A 3'UTR       24981863 chr4:90164774-90164775(-) m6A 3'UTR       24981863 chr4:90167266-90167267(-) m6A 3'UTR       24981863 chr4:90167347-90167348(-) m6A 3'UTR       24981863 chr4:90167405-90167406(-) m6A 3'UTR       24981863 chr4:90167442-90167443(-) m6A 3'UTR       24981863 chr4:90167447-90167448(-) m6A 3'UTR       24981863 chr4:90167522-90167523(-) m6A 3'UTR       24981863 chr4:90167603-90167604(-) m6A 3'UTR       24981863 chr4:90167646-90167647(-) m6A 3'UTR       24981863 chr4:90167683-90167684(-) m6A 3'UTR       24981863 chr4:90167712-90167713(-) m6A 3'UTR       24981863 chr4:90167752-90167753(-) m6A 3'UTR       24981863 chr4:90167987-90167988(-) m6A 3'UTR       24981863 chr4:90168009-90168010(-) m6A 3'UTR       24981863 chr4:90168115-90168116(-) m6A 3'UTR       24981863//26404942//27773535 chr4:90168154-90168155(-) m6A 3'UTR       24981863//26404942//27773535 chr4:90168204-90168205(-) m6A 3'UTR       24981863 chr4:90168716-90168717(-) m6A 3'UTR       24981863//22608085 chr4:90168730-90168731(-) m6A 3'UTR       24981863//22608085 chr4:90168761-90168762(-) m6A 3'UTR       24981863//22608085 chr4:90168840-90168841(-) m6A 3'UTR       24981863//22608085 chr4:90168985-90168986(-) m6A CDS       25456834//24981863//27371828//22608085 chr4:90169070-90169071(-) m6A CDS       25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr4:90169085-90169086(-) m6A CDS       25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr4:90169104-90169105(-) m6A CDS       25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr4:90169116-90169117(-) m6A CDS       25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr4:90169129-90169130(-) m6A CDS       25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr4:90169233-90169234(-) m6A CDS       25456834//24981863//26404942//27371828//22575960//22608085 chr4:90169252-90169253(-) m6A CDS       25456834//24981863//26404942//27371828//22575960//22608085 chr4:90169290-90169291(-) m6A CDS       25456834//24981863//26404942//27371828//22608085 chr4:90169394-90169395(-) m6A CDS       24981863//27773535//27371828//22608085 chr4:90169460-90169461(-) m6A CDS       24981863//27773535//27371828//22608085 chr4:90169466-90169467(-) m6A CDS       24981863//27773535//27371828//22608085 chr4:90169474-90169475(-) m6A CDS       24981863//27773535//22608085 chr4:90169498-90169499(-) m6A CDS       24981863//27773535//22608085 chr4:90169580-90169581(-) m6A CDS       24981863//27773535//22608085 chr4:90169731-90169732(-) m6A CDS       24981863//27371828//22608085 chr4:90169748-90169749(-) m6A CDS       24981863//27371828//22608085 chr4:90169793-90169794(-) m6A CDS       24981863//27371828//22608085 chr4:90169820-90169821(-) m6A CDS       24981863//27371828//27773536//22608085 chr4:90170003-90170004(-) m6A CDS       24981863//22608085 chr4:90170034-90170035(-) m6A CDS       24981863//22608085 chr4:90170199-90170200(-) m6A CDS       27371828 chr4:90170442-90170443(-) m6A CDS       25456834//24981863//27773535//27371828 chr4:90170521-90170522(-) m6A CDS       25456834//24981863//26404942//27773535//27371828//22608085 chr4:90170553-90170554(-) m6A CDS       25456834//24981863//26404942//27773535//27371828//27773536//22608085 chr4:90170607-90170608(-) m6A CDS       25456834//24981863//26404942//27773535//27371828//27773536//22608085 chr4:90170660-90170661(-) m6A CDS       25456834//24981863//27371828//27773536//22608085 chr4:90170669-90170670(-) m6A CDS       25456834//24981863//27371828//27773536//22608085 chr4:90170681-90170682(-) m6A CDS       25456834//24981863//27371828//27773536//22608085 chr4:90170754-90170755(-) m6A CDS       24981863//27371828//22608085 chr4:90170780-90170781(-) m6A CDS       24981863//22608085 chr4:90171044-90171045(-) m6A CDS       - chr4:90171097-90171098(-) m6A CDS       24981863 chr4:90171102-90171103(-) m6A CDS       24981863 chr4:90171224-90171225(-) m6A CDS       24981863//27371828 chr4:90171254-90171255(-) m6A CDS       24981863//27371828 chr4:90171305-90171306(-) m6A 5'UTR       24981863//27371828 chr4:90229053-90229054(-) m6A 5'UTR       25456834//24981863//27371828//27773536 chr4:90229067-90229068(-) m6A 5'UTR       25456834//24981863//27371828//27773536 chr4:90229083-90229084(-) m6A 5'UTR       25456834//24981863//27371828//27773536 chr4:90229115-90229116(-) m6A 5'UTR       25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPRIN3	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: GPRIN3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg