Basic Information:

  VIRBase ID:  

VHID00105963

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          SNRNP48:  NM_152551     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	SNRNP48
miRBase Accession/Entrez ID	MIMAT0012597	154007
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C6orf151//dJ336K20B.1//dJ512B11.2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SNRNP48	chr6:7598563(+) A-I      intronic chr6:7598568(+) A-I      intronic chr6:7598677(+) A-I      intronic chr6:7596367(+) A-I      intronic chr6:7598118(+) A-I      intronic chr6:7598163(+) A-I      intronic chr6:7598216(+) A-I      intronic chr6:7598360(+) A-I      intronic chr6:7598371(+) A-I      intronic chr6:7611368(+) A-I      3'UTR chr6:7611643(+) A-I      3'UTR chr6:7611343(+) A-I      3'UTR chr6:7611318(+) A-I      3'UTR chr6:7611621(+) A-I      3'UTR chr6:7596449(+) A-I      intronic chr6:7598179(+) A-I      intronic chr6:7611644(+) A-I      3'UTR chr6:7611616(+) A-I      3'UTR chr6:7598542(+) A-I      intronic chr6:7598472(+) A-I      intronic chr6:7596456(+) A-I      intronic chr6:7598361(+) A-I      intronic chr6:7598160(+) A-I      intronic chr6:7598649(+) A-I      intronic chr6:7598237(+) A-I      intronic chr6:7598227(+) A-I      intronic chr6:7598307(+) A-I      intronic chr6:7598285(+) A-I      intronic chr6:7598282(+) A-I      intronic chr6:7598374(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SNRNP48	chr6:7611565(+) A-I exon 3'UTR    15258596 chr6:7611611(+) A-I exon 3'UTR    15258596 chr6:7611616(+) A-I exon 3'UTR    15258596 chr6:7596309(+) C-A intron -    22484847 chr6:7598608(+) A-G intron -    22484847 chr6:7598621(+) A-G intron -    22484847 chr6:7611667(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SNRNP48	chr6:7590547-7590548(+) Gm CDS       - chr6:7590605-7590606(+) m6A CDS       - chr6:7594075-7594076(+) m1A CDS       26863196 chr6:7601733-7601734(+) m6A 3'UTR//CDS//exon       27773535 chr6:7605665-7605666(+) m6A CDS//exon       24981863//27773535 chr6:7606382-7606383(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr6:7606400-7606401(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr6:7606416-7606417(+) m1A CDS//exon       26863196 chr6:7609069-7609070(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr6:7610711-7610712(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SNRNP48	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol K562 cells     - Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: SNRNP48

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg