Basic Information:

  VIRBase ID:  

VHID00105829

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          FAT3:  NM_001367949     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	FAT3
miRBase Accession/Entrez ID	MIMAT0012597	120114
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CDHF15//CDHR10//hFat3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAT3	chr11:92275757(+) A-I      intronic chr11:92231483(+) A-I      intronic chr11:92231430(+) A-I      intronic chr11:92275717(+) A-I      intronic chr11:92275731(+) A-I      intronic chr11:92275753(+) A-I      intronic chr11:92275754(+) A-I      intronic chr11:92275755(+) A-I      intronic chr11:92231469(+) A-I      intronic chr11:92231471(+) A-I      intronic chr11:92231474(+) A-I      intronic chr11:92287046(+) A-I      intronic chr11:92597729(+) A-I      intronic chr11:92334602(+) A-I      intronic chr11:92327510(+) A-I      intronic chr11:92604255(+) A-I      intronic chr11:92604257(+) A-I      intronic chr11:92334448(+) A-I      intronic chr11:92130012(+) A-I      intronic chr11:92287468(+) A-I      intronic chr11:92119150(+) A-I      intronic chr11:92424821(+) A-I      intronic chr11:92424785(+) A-I      intronic chr11:92287051(+) A-I      intronic chr11:92287036(+) A-I      intronic chr11:92190826(+) A-I      intronic chr11:92287052(+) A-I      intronic chr11:92190832(+) A-I      intronic chr11:92424744(+) A-I      intronic chr11:92334682(+) A-I      intronic chr11:92557528(+) A-I      intronic chr11:92104636(+) A-I      intronic chr11:92190833(+) A-I      intronic chr11:92557480(+) A-I      intronic chr11:92149339(+) A-I      intronic chr11:92104645(+) A-I      intronic chr11:92334614(+) A-I      intronic chr11:92287172(+) A-I      intronic chr11:92287101(+) A-I      intronic chr11:92127491(+) A-I      intronic chr11:92119158(+) A-I      intronic chr11:92399081(+) A-I      intronic chr11:92287441(+) A-I      intronic chr11:92114433(+) A-I      intronic chr11:92287417(+) A-I      intronic chr11:92287507(+) A-I      intronic chr11:92399082(+) A-I      intronic chr11:92102805(+) A-I      intronic chr11:92149134(+) A-I      intronic chr11:92362710(+) A-I      intronic chr11:92102799(+) A-I      intronic chr11:92149137(+) A-I      intronic chr11:92545627(+) A-I      intronic chr11:92334676(+) A-I      intronic chr11:92287462(+) A-I      intronic chr11:92131651(+) A-I      intronic chr11:92108374(+) A-I      intronic chr11:92114421(+) A-I      intronic chr11:92090437(+) A-I      intronic chr11:92516820(+) A-I      intronic chr11:92104827(+) A-I      intronic chr11:92212377(+) A-I      intronic chr11:92287465(+) A-I      intronic chr11:92212366(+) A-I      intronic chr11:92129972(+) A-I      intronic chr11:92399065(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAT3	chr11:92085295-92085296(+) m6A CDS       22608085 chr11:92085383-92085384(+) m6A CDS       22608085 chr11:92085388-92085389(+) m6A CDS       22608085 chr11:92085441-92085442(+) m6A CDS       22608085 chr11:92085455-92085456(+) m6A CDS       22608085 chr11:92085602-92085603(+) m6A CDS       24981863//22608085 chr11:92085701-92085702(+) m6A CDS       24981863//22608085 chr11:92085742-92085743(+) m6A CDS       24981863//22608085 chr11:92085800-92085801(+) m6A CDS       24981863//22608085 chr11:92085981-92085982(+) m6A CDS       25456834//24981863//22608085 chr11:92085994-92085995(+) m6A CDS       25456834//24981863//22608085 chr11:92086005-92086006(+) m6A CDS       25456834//24981863//22608085 chr11:92086060-92086061(+) m6A CDS       25456834//24981863//22608085 chr11:92086323-92086324(+) m6A CDS       22608085 chr11:92086386-92086387(+) m6A CDS       22608085 chr11:92086486-92086487(+) m6A CDS       22608085 chr11:92086609-92086610(+) m6A CDS       24981863//22608085 chr11:92086623-92086624(+) m6A CDS       24981863//22608085 chr11:92087098-92087099(+) m6A CDS       24981863//22608085 chr11:92087104-92087105(+) m6A CDS       24981863//22608085 chr11:92087137-92087138(+) m6A CDS       24981863//22608085 chr11:92087157-92087158(+) m6A CDS       24981863//22608085 chr11:92087265-92087266(+) m6A CDS       24981863//22608085 chr11:92087333-92087334(+) m6A CDS       24981863//22608085 chr11:92087362-92087363(+) m6A CDS       24981863//22608085 chr11:92087392-92087393(+) m6A CDS       24981863//22608085 chr11:92087437-92087438(+) m6A CDS       24981863//22608085 chr11:92087443-92087444(+) m6A CDS       24981863//22608085 chr11:92087615-92087616(+) m6A CDS       24981863//22608085 chr11:92087653-92087654(+) m6A CDS       24981863//22608085 chr11:92087661-92087662(+) m6A CDS       24981863//22608085 chr11:92087722-92087723(+) m6A CDS       24981863//22608085 chr11:92087778-92087779(+) m6A CDS       24981863//22608085 chr11:92087847-92087848(+) m6A CDS       24981863//22608085 chr11:92087853-92087854(+) m6A CDS       24981863//22608085 chr11:92087955-92087956(+) m6A CDS       24981863//22608085 chr11:92088000-92088001(+) m6A CDS       22608085 chr11:92088155-92088156(+) m6A CDS       22608085 chr11:92088175-92088176(+) m6A CDS       24981863//22608085 chr11:92088283-92088284(+) m6A CDS       24981863//22608085 chr11:92088318-92088319(+) m6A CDS       24981863//22608085 chr11:92088387-92088388(+) m6A CDS//exon       24981863//22608085 chr11:92088411-92088412(+) m6A CDS//exon       24981863//22608085 chr11:92088441-92088442(+) m6A CDS//exon       22608085 chr11:92088455-92088456(+) m6A CDS//exon       22608085 chr11:92088489-92088490(+) m6A CDS//exon       22608085 chr11:92257956-92257957(+) m6A CDS//exon       24981863 chr11:92257985-92257986(+) m6A CDS//exon       24981863 chr11:92258052-92258053(+) m6A CDS//exon       24981863 chr11:92531240-92531241(+) m6A CDS       24981863 chr11:92531658-92531659(+) m6A CDS       25456834//24981863//22608085 chr11:92531681-92531682(+) m6A CDS       25456834//24981863//22608085 chr11:92531697-92531698(+) m6A CDS       25456834//24981863//22608085 chr11:92531705-92531706(+) m6A CDS       25456834//24981863//22608085 chr11:92531742-92531743(+) m6A CDS       25456834//24981863//22608085 chr11:92531846-92531847(+) m6A CDS       25456834//24981863//22608085 chr11:92531929-92531930(+) m6A CDS       24981863//22608085 chr11:92531982-92531983(+) m6A CDS       22608085 chr11:92532006-92532007(+) m6A CDS       22608085 chr11:92532240-92532241(+) m6A CDS       22608085 chr11:92532316-92532317(+) m6A CDS       22608085 chr11:92532360-92532361(+) m6A CDS       24981863//22608085 chr11:92532405-92532406(+) m6A CDS       24981863//22608085 chr11:92532472-92532473(+) m6A CDS       22608085 chr11:92532479-92532480(+) m6A CDS       22608085 chr11:92532855-92532856(+) m6A CDS       24981863//22608085 chr11:92532865-92532866(+) m6A CDS       24981863//22608085 chr11:92533088-92533089(+) m6A CDS       24981863//22608085 chr11:92533122-92533123(+) m6A CDS       24981863//22608085 chr11:92533131-92533132(+) m6A CDS       24981863//22608085 chr11:92533715-92533716(+) m6A CDS       24981863//22608085 chr11:92533757-92533758(+) m6A CDS       24981863//22608085 chr11:92533818-92533819(+) m6A CDS       24981863//22608085 chr11:92533854-92533855(+) m6A CDS       24981863//22608085 chr11:92533863-92533864(+) m6A CDS       24981863//22608085 chr11:92533919-92533920(+) m6A CDS       - chr11:92534361-92534362(+) m6A CDS       24981863//22608085 chr11:92534455-92534456(+) m6A CDS       22608085 chr11:92534462-92534463(+) m6A CDS       22608085 chr11:92534501-92534502(+) m6A CDS       22608085 chr11:92534547-92534548(+) m6A CDS       24981863//22608085 chr11:92534556-92534557(+) m6A CDS       24981863//22608085 chr11:92534624-92534625(+) m6A CDS       24981863//22608085 chr11:92534674-92534675(+) m6A CDS       24981863//22608085 chr11:92534703-92534704(+) m6A CDS       24981863//22608085 chr11:92534719-92534720(+) m6A CDS       24981863//22608085 chr11:92534817-92534818(+) m6A CDS       24981863//22608085 chr11:92534831-92534832(+) m6A CDS       24981863//22608085 chr11:92577116-92577117(+) m6A CDS       22608085 chr11:92577268-92577269(+) m6A CDS       24981863//22608085 chr11:92577328-92577329(+) m6A CDS       24981863//22608085 chr11:92577367-92577368(+) m6A CDS       24981863//22608085 chr11:92577472-92577473(+) m6A CDS       25456834//24981863//22608085 chr11:92577511-92577512(+) m6A 5'UTR//CDS       25456834//24981863//22608085 chr11:92577580-92577581(+) m6A CDS       25456834//24981863//22608085 chr11:92577631-92577632(+) m6A CDS       25456834//24981863//22608085 chr11:92577713-92577714(+) m6A CDS       25456834//24981863//22608085 chr11:92577757-92577758(+) m6A CDS       25456834//24981863//22608085 chr11:92577772-92577773(+) m6A CDS       25456834//24981863//22608085 chr11:92577782-92577783(+) m6A CDS       25456834//24981863//22608085 chr11:92600207-92600208(+) m6A CDS       25456834//24981863//22608085 chr11:92600246-92600247(+) m6A CDS       25456834//24981863//22608085 chr11:92613935-92613936(+) m6A CDS       22608085 chr11:92613968-92613969(+) m6A CDS       22608085 chr11:92616552-92616553(+) m6A CDS//exon       - chr11:92623033-92623034(+) m6A CDS//exon//intron       25456834 chr11:92623040-92623041(+) m6A CDS//exon//intron       25456834 chr11:92623045-92623046(+) m6A CDS//exon//intron       25456834 chr11:92623668-92623669(+) m6A CDS//exon       25456834//22608085 chr11:92623704-92623705(+) m6A CDS//exon       25456834//24981863//22608085 chr11:92623731-92623732(+) m6A CDS//exon       25456834//24981863//22608085 chr11:92623854-92623855(+) m6A CDS//exon       25456834//24981863//22608085 chr11:92623881-92623882(+) m6A CDS//exon       25456834//24981863//22608085 chr11:92623890-92623891(+) m6A CDS//exon       25456834//24981863//22608085 chr11:92623950-92623951(+) m6A CDS//exon       25456834//24981863//22608085 chr11:92624073-92624074(+) m6A CDS       25456834//24981863//22608085 chr11:92624103-92624104(+) m6A CDS       25456834//24981863//22608085 chr11:92624255-92624256(+) m6A CDS       25456834//24981863//22608085 chr11:92624267-92624268(+) m6A CDS       25456834//24981863//22608085 chr11:92624279-92624280(+) m6A 3'UTR       25456834//24981863//22608085 chr11:92624403-92624404(+) m6A 3'UTR       25456834//24981863//22608085 chr11:92629500-92629501(+) m6A 3'UTR       - chr11:92629510-92629511(+) m6A 3'UTR       - chr11:92629522-92629523(+) m6A 3'UTR       - chr11:92629539-92629540(+) m6A 3'UTR       - chr11:92629558-92629559(+) m6A 3'UTR       - chr11:92629604-92629605(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAT3	Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: FAT3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg