Basic Information:

  VIRBase ID:  

VHID00105738

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          LSM10:  NM_032881     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	LSM10
miRBase Accession/Entrez ID	MIMAT0012597	84967
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MST074//MSTP074

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LSM10	chr1:36858040(-) A-I      ncRNA chr1:36857726(-) A-I      intronic chr1:36857712(-) A-I      intronic chr1:36857684(-) A-I      intronic chr1:36857664(-) A-I      intronic chr1:36857650(-) A-I      intronic chr1:36857792(-) A-I      intronic chr1:36857791(-) A-I      intronic chr1:36857781(-) A-I      intronic chr1:36858039(-) A-I      ncRNA chr1:36862109(-) A-I      intronic chr1:36857860(-) A-I      intronic chr1:36857861(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LSM10	chr1:36856984-36856985(-) m6A exon       27773535 chr1:36857018-36857019(-) m6A exon       24284625//24209618//25456834//27773535 chr1:36857097-36857098(-) m6A exon       24284625//24209618//25456834//27773535//27371828 chr1:36857134-36857135(-) m6A exon       24284625//25456834//27773535//27371828 chr1:36857177-36857178(-) m6A exon       24284625//27773535 chr1:36858085-36858086(-) m6A exon       24284625//27773535//22608085 chr1:36859050-36859051(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr1:36859092-36859093(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr1:36859174-36859175(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr1:36859186-36859187(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr1:36859230-36859231(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085 chr1:36859368-36859369(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:36859413-36859414(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:36859464-36859465(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:36859548-36859549(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:36859578-36859579(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:36859599-36859600(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:36859635-36859636(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:36859686-36859687(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:36859699-36859700(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:36863237-36863238(-) m6A exon//intron       24284625//24209618//24981863//27773535//27371828//27773536//22575960//22608085 chr1:36863310-36863311(-) m6A exon//intron       24284625//24209618//24981863//27773535//27371828//27773536//22575960 chr1:36863490-36863491(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LSM10	Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: LSM10

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg