Detail Information

Basic Information:


  VIRBase ID:  

VHID00105561

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:           RAPH1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H8-5p RAPH1
miRBase
Accession/Entrez ID		 MIMAT0012597 65059
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - ALS2CR18//ALS2CR9//LPD//PREL-2//PREL2//RalGDS/AF-6//RMO1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAPH1
chr2:204340991(-) A-I      intronic
chr2:204340990(-) A-I      intronic
chr2:204340986(-) A-I      intronic
chr2:204340985(-) A-I      intronic
chr2:204339617(-) A-I      intronic
chr2:204339612(-) A-I      intronic
chr2:204339608(-) A-I      intronic
chr2:204339599(-) A-I      intronic
chr2:204339590(-) A-I      intronic
chr2:204339589(-) A-I      intronic
chr2:204339571(-) A-I      intronic
chr2:204337028(-) A-I      intronic
chr2:204336980(-) A-I      intronic
chr2:204329063(-) A-I      intronic
chr2:204329062(-) A-I      intronic
chr2:204329057(-) A-I      intronic
chr2:204329042(-) A-I      intronic
chr2:204329025(-) A-I      intronic
chr2:204288386(-) A-I      intronic
chr2:204288379(-) A-I      intronic
chr2:204349134(-) A-I      intronic
chr2:204378790(-) A-I      intronic
chr2:204378767(-) A-I      intronic
chr2:204295288(-) A-I      intronic
chr2:204295310(-) A-I      intronic
chr2:204349160(-) A-I      intronic
chr2:204295318(-) A-I      intronic
chr2:204295340(-) A-I      intronic
chr2:204295280(-) A-I      intronic
chr2:204350561(-) A-I      intronic
chr2:204350570(-) A-I      intronic
chr2:204378759(-) A-I      intronic
chr2:204337926(-) A-I      intronic
chr2:204337030(-) A-I      intronic
chr2:204385268(-) A-I      intronic
chr2:204295321(-) A-I      intronic
chr2:204300019(-) A-I      3'UTR
chr2:204356845(-) A-I      intronic
chr2:204378769(-) A-I      intronic
chr2:204349144(-) A-I      intronic
chr2:204349146(-) A-I      intronic
chr2:204300008(-) A-I      3'UTR
chr2:204378770(-) A-I      intronic
chr2:204341015(-) A-I      intronic
chr2:204288366(-) A-I      intronic
chr2:204300000(-) A-I      3'UTR
chr2:204356794(-) A-I      intronic
chr2:204356808(-) A-I      intronic
chr2:204378782(-) A-I      intronic
chr2:204295287(-) A-I      intronic
chr2:204349170(-) A-I      intronic
chr2:204356813(-) A-I      intronic
chr2:204356809(-) A-I      intronic
chr2:204336258(-) A-I      intronic
chr2:204336291(-) A-I      intronic
chr2:204336304(-) A-I      intronic
chr2:204339671(-) A-I      intronic
chr2:204339750(-) A-I      intronic
chr2:204339963(-) A-I      intronic
chr2:204339965(-) A-I      intronic
chr2:204341076(-) A-I      intronic
chr2:204343298(-) A-I      intronic
chr2:204343318(-) A-I      intronic
chr2:204343324(-) A-I      intronic
chr2:204344122(-) A-I      intronic
chr2:204345159(-) A-I      intronic
chr2:204345171(-) A-I      intronic
chr2:204352381(-) A-I      intronic
chr2:204352387(-) A-I      intronic
chr2:204353786(-) A-I      intronic
chr2:204353797(-) A-I      intronic
chr2:204356311(-) A-I      intronic
chr2:204356312(-) A-I      intronic
chr2:204356320(-) A-I      intronic
chr2:204356404(-) A-I      intronic
chr2:204356406(-) A-I      intronic
chr2:204356410(-) A-I      intronic
chr2:204356413(-) A-I      intronic
chr2:204356473(-) A-I      intronic
chr2:204360973(-) A-I      intronic
chr2:204372691(-) A-I      intronic
chr2:204372742(-) A-I      intronic
chr2:204372746(-) A-I      intronic
chr2:204375618(-) A-I      intronic
chr2:204377451(-) A-I      intronic
chr2:204378628(-) A-I      intronic
chr2:204390326(-) A-I      intronic
chr2:204390498(-) A-I      intronic
chr2:204343302(-) A-I      intronic
chr2:204273673(-) A-I      intronic
chr2:204278899(-) A-I      intronic
chr2:204284160(-) A-I      intronic
chr2:204284216(-) A-I      intronic
chr2:204284230(-) A-I      intronic
chr2:204284284(-) A-I      intronic
chr2:204288209(-) A-I      intronic
chr2:204288225(-) A-I      intronic
chr2:204288287(-) A-I      intronic
chr2:204288400(-) A-I      intronic
chr2:204288408(-) A-I      intronic
chr2:204288416(-) A-I      intronic
chr2:204288417(-) A-I      intronic
chr2:204289160(-) A-I      intronic
chr2:204289229(-) A-I      intronic
chr2:204289386(-) A-I      intronic
chr2:204289394(-) A-I      intronic
chr2:204289395(-) A-I      intronic
chr2:204289397(-) A-I      intronic
chr2:204289401(-) A-I      intronic
chr2:204329261(-) A-I      intronic
chr2:204336142(-) A-I      intronic
chr2:204384800(-) A-I      intronic
chr2:204341097(-) A-I      intronic
chr2:204344305(-) A-I      intronic
chr2:204329210(-) A-I      intronic
chr2:204332766(-) A-I      intronic
chr2:204390494(-) A-I      intronic
chr2:204347463(-) A-I      intronic
chr2:204378811(-) A-I      intronic
chr2:204376578(-) A-I      intronic
chr2:204384938(-) A-I      intronic
chr2:204342854(-) A-I      intronic
chr2:204373129(-) A-I      intronic
chr2:204377008(-) A-I      intronic
chr2:204339751(-) A-I      intronic
chr2:204332761(-) A-I      intronic
chr2:204337058(-) A-I      intronic
chr2:204353684(-) A-I      intronic
chr2:204378375(-) A-I      intronic
chr2:204343373(-) A-I      intronic
chr2:204390391(-) A-I      intronic
chr2:204327667(-) A-I      intronic
chr2:204298138(-) A-I      intronic
chr2:204344248(-) A-I      intronic
chr2:204343377(-) A-I      intronic
chr2:204341173(-) A-I      intronic
chr2:204300062(-) A-I      3'UTR
chr2:204320656(-) A-I      intronic
chr2:204346941(-) A-I      intronic
chr2:204330366(-) A-I      intronic
chr2:204378314(-) A-I      intronic
chr2:204376648(-) A-I      intronic
chr2:204393803(-) A-I      intronic
chr2:204343391(-) A-I      intronic
chr2:204353590(-) A-I      intronic
chr2:204356491(-) A-I      intronic
chr2:204379442(-) A-I      intronic
chr2:204336273(-) A-I      intronic
chr2:204390388(-) A-I      intronic
chr2:204341167(-) A-I      intronic
chr2:204352236(-) A-I      intronic
chr2:204376591(-) A-I      intronic
chr2:204298115(-) A-I      intronic
chr2:204323880(-) A-I      intronic
chr2:204353599(-) A-I      intronic
chr2:204332767(-) A-I      intronic
chr2:204330354(-) A-I      intronic
chr2:204393867(-) A-I      intronic
chr2:204322970(-) A-I      intronic
chr2:204356400(-) A-I      intronic
chr2:204353851(-) A-I      intronic
chr2:204356292(-) A-I      intronic
chr2:204378083(-) A-I      intronic
chr2:204390387(-) A-I      intronic
chr2:204336132(-) A-I      intronic
chr2:204336953(-) A-I      intronic
chr2:204344245(-) A-I      intronic
chr2:204383319(-) A-I      intronic
chr2:204341082(-) A-I      intronic
chr2:204342853(-) A-I      intronic
chr2:204343205(-) A-I      intronic
chr2:204341112(-) A-I      intronic
chr2:204317614(-) A-I      intronic
chr2:204393817(-) A-I      intronic
chr2:204344161(-) A-I      intronic
chr2:204356279(-) A-I      intronic
chr2:204385337(-) A-I      intronic
chr2:204376635(-) A-I      intronic
chr2:204385345(-) A-I      intronic
chr2:204373848(-) A-I      intronic
chr2:204378302(-) A-I      intronic
chr2:204323865(-) A-I      intronic
chr2:204376789(-) A-I      intronic
chr2:204337927(-) A-I      intronic
chr2:204330515(-) A-I      intronic
chr2:204387927(-) A-I      intronic
chr2:204336918(-) A-I      intronic
chr2:204337015(-) A-I      intronic
chr2:204344135(-) A-I      intronic
chr2:204342824(-) A-I      intronic
chr2:204323624(-) A-I      intronic
chr2:204323762(-) A-I      intronic
chr2:204344297(-) A-I      intronic
chr2:204393823(-) A-I      intronic
chr2:204356291(-) A-I      intronic
chr2:204383325(-) A-I      intronic
chr2:204353773(-) A-I      intronic
chr2:204342889(-) A-I      intronic
chr2:204352268(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RAPH1
chr2:204306452(-) A-I exon 3'UTR    19478186
chr2:204308487(-) C-T intron -    22484847
chr2:204341126(-) A-G intron -    22484847
chr2:204356791(-) A-G intron -    22484847
chr2:204390387(-) A-G intron -    22484847
chr2:204390388(-) A-G intron -    22484847
chr2:204390391(-) A-G intron -    22484847
chr2:204390494(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAPH1
chr2:204299917-204299918(-) m6A 3'UTR//intron       27773535
chr2:204300825-204300826(-) m6A 3'UTR//intron       24981863
chr2:204300870-204300871(-) m6A 3'UTR//intron       24981863
chr2:204300883-204300884(-) m6A 3'UTR//intron       24981863
chr2:204300956-204300957(-) m6A 3'UTR//intron       24981863
chr2:204300965-204300966(-) m6A 3'UTR//intron       24981863
chr2:204300987-204300988(-) m6A 3'UTR//intron       24981863
chr2:204302400-204302401(-) m6A 3'UTR//intron       24981863
chr2:204304148-204304149(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:204304166-204304167(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:204304184-204304185(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:204304190-204304191(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:204304216-204304217(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:204304288-204304289(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:204304336-204304337(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:204304398-204304399(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:204304625-204304626(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:204304674-204304675(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:204304736-204304737(-) m6A CDS//intron       24284625//25456834//24981863//27773535
chr2:204304825-204304826(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:204304863-204304864(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:204304919-204304920(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:204304930-204304931(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:204305002-204305003(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:204305034-204305035(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:204305168-204305169(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535
chr2:204305365-204305366(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:204305535-204305536(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:204305572-204305573(-) m6A CDS//intron       24284625//24209618//24981863//27773535
chr2:204306235-204306236(-) m6A 3'UTR//intron       24209618//27773535
chr2:204306344-204306345(-) m6A 3'UTR//intron       27773535
chr2:204306394-204306395(-) m6A 3'UTR//intron       27773535
chr2:204306411-204306412(-) m6A 3'UTR//intron       27773535
chr2:204306496-204306497(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr2:204306540-204306541(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr2:204306552-204306553(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr2:204306592-204306593(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr2:204306758-204306759(-) m6A 3'UTR//intron       24284625//24981863
chr2:204306798-204306799(-) m6A 3'UTR//intron       24284625
chr2:204324735-204324736(-) m6A CDS       27773535
chr2:204325992-204325993(-) m6A CDS       24981863//27773535
chr2:204326009-204326010(-) m6A CDS       24981863//27773535
chr2:204326036-204326037(-) m6A CDS       24981863//27773535
chr2:204326059-204326060(-) m6A CDS       24981863//27773535
chr2:204326067-204326068(-) m6A CDS       24981863//27773535
chr2:204326091-204326092(-) m6A CDS       24981863//27773535
chr2:204326642-204326643(-) m6A CDS       27773535
chr2:204334982-204334983(-) m6A CDS//intron       27773535
chr2:204334995-204334996(-) m6A CDS//intron       27773535
chr2:204335014-204335015(-) m6A CDS//intron       27773535
chr2:204335022-204335023(-) m6A CDS//intron       27773535
chr2:204341816-204341817(-) m6A CDS//intron       27773535
chr2:204354379-204354380(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr2:204354470-204354471(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr2:204354498-204354499(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr2:204360002-204360003(-) m6A CDS//exon       27773536
chr2:204360008-204360009(-) m6A CDS//exon       27773536
chr2:204360029-204360030(-) m6A CDS//exon       27773536
chr2:204360032-204360033(-) m1A CDS//exon       26863196
chr2:204398107-204398108(-) m6A 5'UTR//intron       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RAPH1
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H8-5p
Interactor2: RAPH1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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