Basic Information:

  VIRBase ID:  

VHID00105548

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          SUSD1:  NM_001282640     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	SUSD1
miRBase Accession/Entrez ID	MIMAT0012597	64420
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SUSD1	chr9:114803232-114803233(-) m6A 3'UTR       27773535 chr9:114803268-114803269(-) m6A 3'UTR       24981863//27773535//22608085 chr9:114803415-114803416(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:114803453-114803454(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr9:114803516-114803517(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr9:114803523-114803524(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr9:114803541-114803542(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr9:114803573-114803574(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr9:114803760-114803761(-) m6A 3'UTR       24981863 chr9:114804202-114804203(-) m6A 3'UTR//CDS       24981863 chr9:114873992-114873993(-) m6A CDS//exon       27773535 chr9:114874041-114874042(-) m6A CDS//exon       27773535 chr9:114874049-114874050(-) m6A CDS//exon       27773535 chr9:114874068-114874069(-) m6A CDS//exon       27773535 chr9:114874082-114874083(-) Cm CDS//exon       - chr9:114874094-114874095(-) m6A CDS//exon       27773535 chr9:114874105-114874106(-) m6A CDS//exon       27773535 chr9:114905787-114905788(-) m6A CDS//exon       27773535 chr9:114905793-114905794(-) m6A CDS//exon       27773535 chr9:114905848-114905849(-) m6A CDS//exon       27773535 chr9:114911556-114911557(-) m6A CDS       27773535 chr9:114911567-114911568(-) m6A CDS       27773535 chr9:114911636-114911637(-) m6A CDS       27773535 chr9:114919791-114919792(-) m6A CDS       27773535 chr9:114919864-114919865(-) m6A CDS       24209618//27773535 chr9:114937526-114937527(-) m6A 5'UTR       27773536 chr9:114937654-114937655(-) m6A 5'UTR       27773536 chr9:114937679-114937680(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SUSD1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: SUSD1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg