Basic Information:

  VIRBase ID:  

VHID00105476

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          CGN:  NM_020770     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	CGN
miRBase Accession/Entrez ID	MIMAT0012597	57530
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CGN	chr1:151497776(+) A-I      intronic chr1:151497784(+) A-I      intronic chr1:151505831(+) A-I      intronic chr1:151497728(+) A-I      intronic chr1:151497715(+) A-I      intronic chr1:151497714(+) A-I      intronic chr1:151497698(+) A-I      intronic chr1:151505790(+) A-I      intronic chr1:151505766(+) A-I      intronic chr1:151505750(+) A-I      intronic chr1:151506215(+) A-I      intronic chr1:151489041(+) A-I      intronic chr1:151505368(+) A-I      intronic chr1:151500571(+) A-I      intronic chr1:151506214(+) A-I      intronic chr1:151495270(+) A-I      intronic chr1:151505715(+) A-I      intronic chr1:151505518(+) A-I      intronic chr1:151505363(+) A-I      intronic chr1:151488089(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CGN	chr1:151491291-151491292(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:151491302-151491303(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:151491530-151491531(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:151491583-151491584(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:151491595-151491596(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:151491615-151491616(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:151491641-151491642(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:151491659-151491660(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:151491700-151491701(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:151491761-151491762(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:151491799-151491800(+) m6A CDS       24284625 chr1:151491806-151491807(+) m6A CDS       24284625 chr1:151495966-151495967(+) m6A CDS       24284625//24209618//25456834//24981863//27773535 chr1:151496709-151496710(+) m6A CDS       24284625//24209618//27773535 chr1:151496727-151496728(+) m6A CDS       24284625//24209618//27773535 chr1:151496759-151496760(+) m6A CDS       24284625//24209618//27773535 chr1:151496781-151496782(+) m6A CDS       24284625//24209618//27773535 chr1:151496791-151496792(+) m6A CDS       24284625//24209618//27773535 chr1:151497161-151497162(+) m6A CDS       24209618//27773535 chr1:151497169-151497170(+) m6A CDS       24209618//27773535 chr1:151497196-151497197(+) m6A CDS       24209618//27773535 chr1:151497295-151497296(+) m6A CDS       24284625//24209618 chr1:151497321-151497322(+) m6A CDS       24284625//24209618 chr1:151498118-151498119(+) m6A CDS//exon       24284625//24209618 chr1:151498192-151498193(+) m6A CDS//exon       24209618 chr1:151498204-151498205(+) m6A CDS//exon       24209618 chr1:151498235-151498236(+) m6A CDS//exon       24209618//24981863//27773535 chr1:151501837-151501838(+) m6A CDS//exon       24284625//24209618//24981863 chr1:151501857-151501858(+) m6A CDS//exon       24284625//24209618//25456834//24981863 chr1:151501904-151501905(+) m6A CDS       24284625//24209618//25456834//24981863 chr1:151501971-151501972(+) m6A CDS       24284625//24209618//25456834//24981863 chr1:151501976-151501977(+) m6A CDS       24284625//24209618//25456834//24981863 chr1:151501993-151501994(+) m6A CDS       24284625//24209618//25456834//24981863 chr1:151502015-151502016(+) m6A CDS       24284625//24209618//25456834//24981863 chr1:151502459-151502460(+) m6A CDS       24284625//24209618 chr1:151502522-151502523(+) m6A CDS       24284625//24209618//25456834 chr1:151502571-151502572(+) m6A CDS       24284625//24209618//25456834 chr1:151502972-151502973(+) m6A CDS       24284625//24209618//25456834 chr1:151503102-151503103(+) m6A CDS       24284625//24209618//25456834 chr1:151503109-151503110(+) m6A CDS       24284625//24209618//25456834//24981863 chr1:151503193-151503194(+) m6A CDS       24284625//24209618//25456834 chr1:151503198-151503199(+) m6A CDS       24284625//24209618//25456834 chr1:151503205-151503206(+) m6A CDS       24284625//24209618//25456834 chr1:151503214-151503215(+) m6A CDS       24284625//24209618//25456834 chr1:151504896-151504897(+) m6A CDS       24284625//24209618//25456834 chr1:151505015-151505016(+) m6A CDS       24209618 chr1:151505026-151505027(+) m6A CDS       24209618 chr1:151506562-151506563(+) m6A CDS       - chr1:151506651-151506652(+) m6A exon//intron       - chr1:151507578-151507579(+) Cm CDS//exon       - chr1:151509327-151509328(+) m6A CDS//exon       24284625//24981863 chr1:151509362-151509363(+) m6A CDS//exon       24284625//24981863 chr1:151509807-151509808(+) m6A CDS//exon       24284625//24981863 chr1:151509838-151509839(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535 chr1:151509846-151509847(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535 chr1:151509932-151509933(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535 chr1:151509939-151509940(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535 chr1:151510003-151510004(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535 chr1:151510023-151510024(+) m6A 3'UTR//exon       24284625//25456834//24981863//27773535 chr1:151510115-151510116(+) m6A 3'UTR//exon       24284625//25456834 chr1:151510813-151510814(+) m6A 3'UTR//exon       24981863//27773535 chr1:151510821-151510822(+) m6A 3'UTR//exon       24981863//27773535 chr1:151510909-151510910(+) m6A 3'UTR//exon       24981863//27773535 chr1:151510940-151510941(+) m6A 3'UTR//exon       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CGN	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: CGN

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg