Basic Information:

  VIRBase ID:  

VHID00105358

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          LIN7C:  NM_018362     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	LIN7C
miRBase Accession/Entrez ID	MIMAT0012597	55327
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LIN-7-C//LIN-7C//MALS-3//MALS3//VELI3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LIN7C	chr11:27524615(-) A-I      intronic chr11:27525279(-) A-I      intronic chr11:27525199(-) A-I      intronic chr11:27525185(-) A-I      intronic chr11:27526714(-) A-I      intronic chr11:27525314(-) A-I      intronic chr11:27525288(-) A-I      intronic chr11:27525234(-) A-I      intronic chr11:27525231(-) A-I      intronic chr11:27525230(-) A-I      intronic chr11:27526796(-) A-I      intronic chr11:27526767(-) A-I      intronic chr11:27525513(-) A-I      intronic chr11:27525467(-) A-I      intronic chr11:27525403(-) A-I      intronic chr11:27525332(-) A-I      intronic chr11:27525331(-) A-I      intronic chr11:27516825(-) A-I      3'UTR chr11:27525326(-) A-I      intronic chr11:27525198(-) A-I      intronic chr11:27525610(-) A-I      intronic chr11:27525432(-) A-I      intronic chr11:27525509(-) A-I      intronic chr11:27524550(-) A-I      intronic chr11:27517444(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LIN7C	chr11:27520100-27520101(-) m6A 3'UTR       24981863//27773535 chr11:27520183-27520184(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr11:27520200-27520201(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr11:27520315-27520316(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085 chr11:27520336-27520337(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr11:27520953-27520954(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr11:27521002-27521003(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr11:27521007-27521008(-) m6A CDS       24209618//24981863//27773535//22608085 chr11:27521048-27521049(-) m6A CDS       24209618//27773535 chr11:27521082-27521083(-) m6A CDS       24209618//27773535 chr11:27523084-27523085(-) m6A CDS//intron       24209618//27773535 chr11:27523091-27523092(-) m6A CDS//intron       24209618//27773535 chr11:27523104-27523105(-) m6A CDS//intron       24209618//27773535 chr11:27523402-27523403(-) m6A CDS       24209618//24981863//27773535//22608085 chr11:27523435-27523436(-) m6A CDS       24209618//24981863//27773535//22608085 chr11:27528281-27528282(-) m6A CDS       24209618//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LIN7C	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: LIN7C

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg