Detail Information

Basic Information:


  VIRBase ID:  

VHID00105342

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:           SMU1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H8-5p SMU1
miRBase
Accession/Entrez ID		 MIMAT0012597 55234
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - BWD//fSAP57//SMU-1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SMU1
chr9:33055271(-) A-I      intronic
chr9:33059741(-) A-I      intronic
chr9:33075193(-) A-I      intronic
chr9:33075263(-) A-I      intronic
chr9:33049712(-) A-I      intronic
chr9:33075288(-) A-I      intronic
chr9:33054110(-) A-I      intronic
chr9:33042998(-) A-I      3'UTR
chr9:33046816(-) A-I      3'UTR
chr9:33042919(-) A-I      3'UTR
chr9:33042906(-) A-I      3'UTR
chr9:33043921(-) A-I      3'UTR
chr9:33043918(-) A-I      3'UTR
chr9:33043870(-) A-I      3'UTR
chr9:33043866(-) A-I      3'UTR
chr9:33043853(-) A-I      3'UTR
chr9:33046889(-) A-I      3'UTR
chr9:33042255(-) A-I      3'UTR
chr9:33042311(-) A-I      3'UTR
chr9:33042316(-) A-I      3'UTR
chr9:33042319(-) A-I      3'UTR
chr9:33043843(-) A-I      3'UTR
chr9:33043842(-) A-I      3'UTR
chr9:33043814(-) A-I      3'UTR
chr9:33046742(-) A-I      3'UTR
chr9:33046723(-) A-I      3'UTR
chr9:33046706(-) A-I      3'UTR
chr9:33042291(-) A-I      3'UTR
chr9:33042362(-) A-I      3'UTR
chr9:33042297(-) A-I      3'UTR
chr9:33046645(-) A-I      3'UTR
chr9:33046644(-) A-I      3'UTR
chr9:33042229(-) A-I      3'UTR
chr9:33042376(-) A-I      3'UTR
chr9:33042241(-) A-I      3'UTR
chr9:33042250(-) A-I      3'UTR
chr9:33042252(-) A-I      3'UTR
chr9:33042254(-) A-I      3'UTR
chr9:33042257(-) A-I      3'UTR
chr9:33042275(-) A-I      3'UTR
chr9:33043122(-) A-I      3'UTR
chr9:33043111(-) A-I      3'UTR
chr9:33043104(-) A-I      3'UTR
chr9:33043060(-) A-I      3'UTR
chr9:33042292(-) A-I      3'UTR
chr9:33042220(-) A-I      3'UTR
chr9:33043052(-) A-I      3'UTR
chr9:33043036(-) A-I      3'UTR
chr9:33042280(-) A-I      3'UTR
chr9:33042962(-) A-I      3'UTR
chr9:33046686(-) A-I      3'UTR
chr9:33046684(-) A-I      3'UTR
chr9:33042288(-) A-I      3'UTR
chr9:33051796(-) A-I      intronic
chr9:33074967(-) A-I      intronic
chr9:33066721(-) A-I      intronic
chr9:33049654(-) A-I      intronic
chr9:33075130(-) A-I      intronic
chr9:33060276(-) A-I      intronic
chr9:33063274(-) A-I      intronic
chr9:33042982(-) A-I      3'UTR
chr9:33042972(-) A-I      3'UTR
chr9:33064157(-) A-I      intronic
chr9:33075353(-) A-I      intronic
chr9:33069683(-) A-I      intronic
chr9:33055319(-) A-I      intronic
chr9:33055284(-) A-I      intronic
chr9:33054262(-) A-I      intronic
chr9:33068711(-) A-I      intronic
chr9:33064216(-) A-I      intronic
chr9:33066778(-) A-I      intronic
chr9:33066692(-) A-I      intronic
chr9:33074975(-) A-I      intronic
chr9:33068671(-) A-I      intronic
chr9:33060280(-) A-I      intronic
chr9:33068618(-) A-I      intronic
chr9:33068704(-) A-I      intronic
chr9:33054276(-) A-I      intronic
chr9:33055267(-) A-I      intronic
chr9:33059869(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SMU1
chr9:33042186(-) A-I exon 3'UTR    15342557   //22327324
chr9:33042267(-) A-I exon 3'UTR    15342557   //21960545
chr9:33042287(-) A-I exon 3'UTR    15342557
chr9:33042295(-) A-I exon 3'UTR    15342557
chr9:33042299(-) A-I exon 3'UTR    15342557
chr9:33042309(-) A-I exon 3'UTR    15342557
chr9:33042312(-) A-I exon 3'UTR    15342557
chr9:33042313(-) A-I exon 3'UTR    15342557
chr9:33042982(-) A-I exon 3'UTR    15342557
chr9:33043864(-) A-I exon 3'UTR    15342557
chr9:33043874(-) A-I exon 3'UTR    15342557
chr9:33043892(-) A-I exon 3'UTR    15342557
chr9:33043906(-) A-I exon 3'UTR    15342557
chr9:33043912(-) A-I exon 3'UTR    15342557
chr9:33042330(-) A-I exon 3'UTR    22327324
chr9:33042258(-) A-I exon 3'UTR    21960545
chr9:33042186(-) A-G exon 3'UTR    21725310
chr9:33042277(-) A-G exon 3'UTR    22484847
chr9:33042287(-) A-G exon 3'UTR    22484847
chr9:33042295(-) A-G exon 3'UTR    22484847
chr9:33042313(-) A-G exon 3'UTR    22484847
chr9:33042330(-) A-G exon 3'UTR    22484847
chr9:33043859(-) A-G exon 3'UTR    22484847
chr9:33043864(-) A-G exon 3'UTR    22484847
chr9:33043873(-) A-G exon 3'UTR    22484847
chr9:33043912(-) A-G exon 3'UTR    22484847
chr9:33043928(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SMU1
chr9:33044864-33044865(-) m6A 3'UTR       27773535
chr9:33044876-33044877(-) m6A 3'UTR       27773535
chr9:33044902-33044903(-) m6A 3'UTR       27773535
chr9:33044982-33044983(-) m6A 3'UTR       24981863//27773535
chr9:33045020-33045021(-) m6A 3'UTR       24981863//27773535
chr9:33045036-33045037(-) m6A 3'UTR       24981863//27773535
chr9:33045081-33045082(-) m6A 3'UTR       27773535
chr9:33046547-33046548(-) m6A 3'UTR       27773535
chr9:33046566-33046567(-) m6A 3'UTR       27773535
chr9:33046771-33046772(-) m6A 3'UTR       24209618
chr9:33048215-33048216(-) m6A CDS       -
chr9:33053133-33053134(-) m6A CDS       -
chr9:33053151-33053152(-) m6A CDS       -
chr9:33053184-33053185(-) m6A CDS       -
chr9:33053224-33053225(-) m6A CDS       -
chr9:33056929-33056930(-) Gm CDS       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SMU1
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H8-5p
Interactor2: SMU1

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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