Basic Information:

  VIRBase ID:  

VHID00105307

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          NUP62CL:  NR_033676     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	NUP62CL
miRBase Accession/Entrez ID	MIMAT0012597	54830
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NUP62CL	chrX:106375786(-) A-I      intronic chrX:106377085(-) A-I      intronic chrX:106377086(-) A-I      intronic chrX:106386662(-) A-I      intronic chrX:106432981(-) A-I      intronic chrX:106375771(-) A-I      intronic chrX:106375801(-) A-I      intronic chrX:106429980(-) A-I      intronic chrX:106430028(-) A-I      intronic chrX:106375949(-) A-I      intronic chrX:106430041(-) A-I      intronic chrX:106375953(-) A-I      intronic chrX:106375942(-) A-I      intronic chrX:106435707(-) A-I      intronic chrX:106430106(-) A-I      intronic chrX:106430113(-) A-I      intronic chrX:106375863(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NUP62CL	chrX:106375228(-) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NUP62CL	chrX:106367045-106367046(-) m6A 3'UTR       24981863//27773535 chrX:106436266-106436267(-) m6A 5'UTR//intron       24981863 chrX:106449530-106449531(-) m6A 5'UTR       24981863 chrX:106449587-106449588(-) m6A 5'UTR       24981863 chrX:106449634-106449635(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NUP62CL	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: NUP62CL

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg