Basic Information:

  VIRBase ID:  

VHID00105106

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          TRIM58:  NM_015431     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	TRIM58
miRBase Accession/Entrez ID	MIMAT0012597	25893
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BIA2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRIM58	chr1:248032343(+) A-I      intronic chr1:248041207(+) A-I      3'UTR chr1:248041238(+) A-I      3'UTR chr1:248041216(+) A-I      3'UTR chr1:248040712(+) A-I      3'UTR chr1:248032226(+) A-I      intronic chr1:248040764(+) A-I      3'UTR chr1:248040620(+) A-I      3'UTR chr1:248040687(+) A-I      3'UTR chr1:248040674(+) A-I      3'UTR chr1:248025657(+) A-I      intronic chr1:248032233(+) A-I      intronic chr1:248025642(+) A-I      intronic chr1:248040672(+) A-I      3'UTR chr1:248038709(+) A-I      intronic chr1:248040619(+) A-I      3'UTR chr1:248040577(+) A-I      3'UTR chr1:248040636(+) A-I      3'UTR chr1:248040671(+) A-I      3'UTR chr1:248040663(+) A-I      3'UTR chr1:248040658(+) A-I      3'UTR chr1:248040628(+) A-I      3'UTR chr1:248040763(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TRIM58	chr1:248039713(+) A-I exon CDS    15342557 chr1:248040577(+) A-I exon 3'UTR    15342557 chr1:248040619(+) A-I exon 3'UTR    15342557 chr1:248040620(+) A-I exon 3'UTR    15342557 chr1:248040628(+) A-I exon 3'UTR    15342557 chr1:248040636(+) A-I exon 3'UTR    15342557 chr1:248040658(+) A-I exon 3'UTR    15342557 chr1:248040663(+) A-I exon 3'UTR    15342557 chr1:248040671(+) A-I exon 3'UTR    15342557 chr1:248040672(+) A-I exon 3'UTR    15342557 chr1:248040674(+) A-I exon 3'UTR    15342557 chr1:248040687(+) A-I exon 3'UTR    15342557 chr1:248040712(+) A-I exon 3'UTR    15342557 chr1:248041795(+) A-I exon 3'UTR    19478186

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRIM58	chr1:248020852-248020853(+) m6A CDS       24209618 chr1:248023941-248023942(+) m6A CDS       24209618 chr1:248023999-248024000(+) m6A CDS       24209618 chr1:248028131-248028132(+) m6A CDS       24209618//25456834 chr1:248031296-248031297(+) m6A CDS       24209618 chr1:248031309-248031310(+) m6A CDS       24209618 chr1:248031316-248031317(+) m6A CDS       24209618 chr1:248039280-248039281(+) m6A CDS       24209618 chr1:248039423-248039424(+) m6A CDS       25456834 chr1:248039446-248039447(+) m6A CDS       25456834 chr1:248039576-248039577(+) m6A CDS       24209618//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRIM58	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: TRIM58

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep
Support Database	RepTar//VmiReg