Detail Information

Basic Information:


  VIRBase ID:  

VHID00104990

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:           KIF21B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H8-5p KIF21B
miRBase
Accession/Entrez ID		 MIMAT0012597 23046
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KIF21B
chr1:200955759(-) A-I      intronic
chr1:200955713(-) A-I      intronic
chr1:200955718(-) A-I      intronic
chr1:200955661(-) A-I      intronic
chr1:200970039(-) A-I      intronic
chr1:200970070(-) A-I      intronic
chr1:200955723(-) A-I      intronic
chr1:200970159(-) A-I      intronic
chr1:200954521(-) A-I      intronic
chr1:200954534(-) A-I      intronic
chr1:200970172(-) A-I      intronic
chr1:200954570(-) A-I      intronic
chr1:200955540(-) A-I      intronic
chr1:200954547(-) A-I      intronic
chr1:200955640(-) A-I      intronic
chr1:200955656(-) A-I      intronic
chr1:200970152(-) A-I      intronic
chr1:200955169(-) A-I      intronic
chr1:200966688(-) A-I      intronic
chr1:200954459(-) A-I      intronic
chr1:200954494(-) A-I      intronic
chr1:200955071(-) A-I      intronic
chr1:200955111(-) A-I      intronic
chr1:200970123(-) A-I      intronic
chr1:200954405(-) A-I      intronic
chr1:200991407(-) A-I      intronic
chr1:200955157(-) A-I      intronic
chr1:200955070(-) A-I      intronic
chr1:200954572(-) A-I      intronic
chr1:200954533(-) A-I      intronic
chr1:200954569(-) A-I      intronic
chr1:200954504(-) A-I      intronic
chr1:200970113(-) A-I      intronic
chr1:200951850(-) A-I      intronic
chr1:200954559(-) A-I      intronic
chr1:200955524(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KIF21B
chr1:200970617(-) A-I intron -    22028664
chr1:200970657(-) A-I intron -    22028664
chr1:200970669(-) A-I intron -    22028664
chr1:200970673(-) A-I intron -    22028664
chr1:200970676(-) A-I intron -    22028664
chr1:200970679(-) A-I intron -    22028664
chr1:200970684(-) A-I intron -    22028664
chr1:200970685(-) A-I intron -    22028664
chr1:200970686(-) A-I intron -    22028664
chr1:200970708(-) A-I intron -    22028664
chr1:200970710(-) A-I intron -    22028664
chr1:200970736(-) A-I intron -    22028664
chr1:200970740(-) A-I intron -    22028664
chr1:200970755(-) A-I intron -    22028664
chr1:200956288(-) T-C exon CDS    21725310
chr1:200962893(-) G-T intron -    22484847
chr1:200970152(-) A-G intron -    22484847
chr1:200970669(-) A-G intron -    22484847
chr1:200970673(-) A-G intron -    22484847
chr1:200970676(-) A-G intron -    22484847
chr1:200970682(-) A-G intron -    22484847
chr1:200970708(-) A-G intron -    22484847
chr1:200970755(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KIF21B
chr1:200938961-200938962(-) m6A 3'UTR       27773535
chr1:200939651-200939652(-) m6A 3'UTR       25456834
chr1:200939671-200939672(-) m6A 3'UTR       25456834
chr1:200940595-200940596(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr1:200940604-200940605(-) m6A 3'UTR       24284625//25456834//24981863//27773535
chr1:200940672-200940673(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828
chr1:200940792-200940793(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828
chr1:200940798-200940799(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828
chr1:200940824-200940825(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828
chr1:200941070-200941071(-) m6A 3'UTR       24209618//25456834//27371828
chr1:200942490-200942491(-) m6A 3'UTR       24284625//25456834//27371828
chr1:200942547-200942548(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr1:200942599-200942600(-) m6A 3'UTR       25456834//27371828
chr1:200942621-200942622(-) m6A 3'UTR       25456834//27371828
chr1:200943931-200943932(-) m6A CDS       27371828
chr1:200944018-200944019(-) m6A CDS       27371828
chr1:200959097-200959098(-) m6A CDS       27371828
chr1:200959151-200959152(-) m6A CDS       27371828
chr1:200959160-200959161(-) m6A CDS       27371828
chr1:200959270-200959271(-) m6A CDS       27371828
chr1:200960083-200960084(-) m6A CDS       27371828
chr1:200960110-200960111(-) m6A CDS       27371828
chr1:200960197-200960198(-) m6A CDS       24209618//27371828
chr1:200960217-200960218(-) m6A CDS       24209618//27371828
chr1:200960792-200960793(-) m6A CDS       24209618//27371828
chr1:200961452-200961453(-) m6A CDS       24284625//24209618//24981863//27371828
chr1:200961462-200961463(-) m6A CDS       24284625//24209618//24981863//27371828
chr1:200965331-200965332(-) m1A CDS       26863196
chr1:200965361-200965362(-) m1A CDS       26863196
chr1:200965390-200965391(-) m6A CDS       24284625//24209618//24981863//27371828
chr1:200965441-200965442(-) m6A CDS       24284625//24209618//24981863//27371828
chr1:200965447-200965448(-) m6A CDS       24284625//24209618//24981863//27371828
chr1:200965474-200965475(-) m6A CDS       24209618//27773535//27371828
chr1:200967516-200967517(-) m6A CDS       27773535//27371828
chr1:200967549-200967550(-) m6A CDS       27773535//27371828
chr1:200967559-200967560(-) Am CDS       -
chr1:200967561-200967562(-) m6A CDS       24209618//27773535//27371828
chr1:200967624-200967625(-) m6A CDS       24209618//25456834//27371828
chr1:200967684-200967685(-) m6A CDS       24284625//24209618//25456834//27371828
chr1:200967696-200967697(-) m6A CDS       24284625//24209618//25456834//27371828
chr1:200968490-200968491(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828
chr1:200968496-200968497(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828
chr1:200968502-200968503(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828
chr1:200968529-200968530(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828
chr1:200969044-200969045(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828
chr1:200969058-200969059(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828
chr1:200969542-200969543(-) m1A CDS       26863196
chr1:200969562-200969563(-) m6A CDS       24284625//25456834//24981863//27773535//27371828
chr1:200969860-200969861(-) Gm CDS       -
chr1:200969871-200969872(-) m6A CDS       -
chr1:200970548-200970549(-) m6A exon//intron       -
chr1:200972356-200972357(-) m6A exon//intron       -
chr1:200972364-200972365(-) m6A exon//intron       -
chr1:200972784-200972785(-) m6A CDS//exon       -
chr1:200972789-200972790(-) m6A CDS//exon       -
chr1:200972795-200972796(-) m6A CDS//exon       -
chr1:200972810-200972811(-) m6A CDS//exon       -
chr1:200972856-200972857(-) m6A CDS//exon       -
chr1:200972873-200972874(-) m6A CDS//exon       -
chr1:200972904-200972905(-) m6A CDS//exon       -
chr1:200973512-200973513(-) m6A CDS//exon       24209618
chr1:200973548-200973549(-) m6A CDS//exon       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate KIF21B
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H8-5p
Interactor2: KIF21B

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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