Basic Information:

  VIRBase ID:  

VHID00104795

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          PHACTR2:  NM_001100166     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	PHACTR2
miRBase Accession/Entrez ID	MIMAT0012597	9749
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C6orf56

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PHACTR2	chr6:144046796(+) A-I      intronic chr6:144021536(+) A-I      intronic chr6:144021548(+) A-I      intronic chr6:143887495(+) A-I      intronic chr6:144021549(+) A-I      intronic chr6:144021571(+) A-I      intronic chr6:144130582(+) A-I      intronic chr6:144046807(+) A-I      intronic chr6:144021514(+) A-I      intronic chr6:144046810(+) A-I      intronic chr6:144101471(+) A-I      intronic chr6:144101493(+) A-I      intronic chr6:144021565(+) A-I      intronic chr6:143887510(+) A-I      intronic chr6:144101494(+) A-I      intronic chr6:144021527(+) A-I      intronic chr6:143982773(+) A-I      intronic chr6:143859208(+) A-I      intronic chr6:143862162(+) A-I      intronic chr6:143872034(+) A-I      intronic chr6:143880904(+) A-I      intronic chr6:143880912(+) A-I      intronic chr6:143885026(+) A-I      intronic chr6:143887363(+) A-I      intronic chr6:143887449(+) A-I      intronic chr6:143887500(+) A-I      intronic chr6:143887623(+) A-I      intronic chr6:143887675(+) A-I      intronic chr6:143887676(+) A-I      intronic chr6:143887680(+) A-I      intronic chr6:143887688(+) A-I      intronic chr6:143887715(+) A-I      intronic chr6:143900182(+) A-I      intronic chr6:144100732(+) A-I      intronic chr6:144101500(+) A-I      intronic chr6:144101501(+) A-I      intronic chr6:144101515(+) A-I      intronic chr6:144102147(+) A-I      intronic chr6:144126496(+) A-I      intronic chr6:144130595(+) A-I      intronic chr6:143962721(+) A-I      intronic chr6:144130619(+) A-I      intronic chr6:144130622(+) A-I      intronic chr6:144131016(+) A-I      intronic chr6:144131827(+) A-I      intronic chr6:144131838(+) A-I      intronic chr6:144100696(+) A-I      intronic chr6:144062459(+) A-I      intronic chr6:144060224(+) A-I      intronic chr6:144059794(+) A-I      intronic chr6:144059786(+) A-I      intronic chr6:144046843(+) A-I      intronic chr6:144046811(+) A-I      intronic chr6:143962697(+) A-I      intronic chr6:144143362(+) A-I      intronic chr6:143887439(+) A-I      intronic chr6:144046544(+) A-I      intronic chr6:144046395(+) A-I      intronic chr6:144045200(+) A-I      intronic chr6:144045199(+) A-I      intronic chr6:144143530(+) A-I      intronic chr6:143959535(+) A-I      intronic chr6:143959439(+) A-I      intronic chr6:143945343(+) A-I      intronic chr6:144136758(+) A-I      intronic chr6:143935216(+) A-I      intronic chr6:143935212(+) A-I      intronic chr6:143934207(+) A-I      intronic chr6:143902809(+) A-I      intronic chr6:143902470(+) A-I      intronic chr6:144143611(+) A-I      intronic chr6:144138128(+) A-I      intronic chr6:143900324(+) A-I      intronic chr6:143900193(+) A-I      intronic chr6:144045179(+) A-I      intronic chr6:144021572(+) A-I      intronic chr6:144021531(+) A-I      intronic chr6:144021530(+) A-I      intronic chr6:144015108(+) A-I      intronic chr6:144015107(+) A-I      intronic chr6:143982946(+) A-I      intronic chr6:143982811(+) A-I      intronic chr6:143859035(+) A-I      intronic chr6:144135297(+) A-I      intronic chr6:144021437(+) A-I      intronic chr6:143965454(+) A-I      intronic chr6:144037610(+) A-I      intronic chr6:144131163(+) A-I      intronic chr6:143934279(+) A-I      intronic chr6:144130531(+) A-I      intronic chr6:143945518(+) A-I      intronic chr6:144143365(+) A-I      intronic chr6:144131111(+) A-I      intronic chr6:143962783(+) A-I      intronic chr6:144104601(+) A-I      intronic chr6:144046844(+) A-I      intronic chr6:144143373(+) A-I      intronic chr6:144129446(+) A-I      intronic chr6:143975787(+) A-I      intronic chr6:144046908(+) A-I      intronic chr6:143946146(+) A-I      intronic chr6:144130600(+) A-I      intronic chr6:144059648(+) A-I      intronic chr6:144104592(+) A-I      intronic chr6:143908889(+) A-I      intronic chr6:144131083(+) A-I      intronic chr6:144123657(+) A-I      intronic chr6:144129423(+) A-I      intronic chr6:144100670(+) A-I      intronic chr6:144131881(+) A-I      intronic chr6:144046455(+) A-I      intronic chr6:144046869(+) A-I      intronic chr6:143897916(+) A-I      intronic chr6:143945308(+) A-I      intronic chr6:144131101(+) A-I      intronic chr6:144130624(+) A-I      intronic chr6:144131010(+) A-I      intronic chr6:144130993(+) A-I      intronic chr6:143945512(+) A-I      intronic chr6:144037567(+) A-I      intronic chr6:144143546(+) A-I      intronic chr6:144134493(+) A-I      intronic chr6:144130583(+) A-I      intronic chr6:144143399(+) A-I      intronic chr6:144057205(+) A-I      intronic chr6:144059795(+) A-I      intronic chr6:143993537(+) A-I      intronic chr6:144014558(+) A-I      intronic chr6:144031597(+) A-I      intronic chr6:144100747(+) A-I      intronic chr6:144021442(+) A-I      intronic chr6:144138038(+) A-I      intronic chr6:143900241(+) A-I      intronic chr6:144045398(+) A-I      intronic chr6:144057222(+) A-I      intronic chr6:143859070(+) A-I      intronic chr6:144123655(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PHACTR2	chr6:144050141(+) A-I intron -    21960545 chr6:144050185(+) A-I intron -    21960545 chr6:143944498(+) A-G intron -    22484847 chr6:143944522(+) G-A intron -    22484847 chr6:144007663(+) T-C intron -    22484847 chr6:144040486(+) C-T intron -    22484847 chr6:144046455(+) A-G intron -    22484847 chr6:144046844(+) A-G intron -    22484847 chr6:144046869(+) A-G intron -    22484847 chr6:144059471(+) A-G intron -    22484847 chr6:144131039(+) A-G intron -    22484847 chr6:144131111(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PHACTR2	chr6:143929444-143929445(+) m6A 5'UTR//intron       24981863 chr6:143929450-143929451(+) m6A CDS//intron       24981863 chr6:143999151-143999152(+) m6A 5'UTR//intron       24981863 chr6:143999177-143999178(+) m6A 5'UTR//exon//intron       24981863 chr6:143999206-143999207(+) m6A 5'UTR//exon//intron       24981863 chr6:143999238-143999239(+) m6A 5'UTR//exon//intron       - chr6:143999253-143999254(+) m6A 5'UTR//exon//intron       - chr6:143999278-143999279(+) m6A 5'UTR//exon//intron       - chr6:143999309-143999310(+) m6A CDS//exon//intron       - chr6:144033159-144033160(+) m6A CDS//exon//intron       - chr6:144033164-144033165(+) m6A CDS//exon//intron       - chr6:144033182-144033183(+) m6A CDS//exon//intron       - chr6:144033289-144033290(+) m6A CDS//exon//intron       24981863//27773535 chr6:144033310-144033311(+) m6A CDS//exon//intron       24981863 chr6:144075012-144075013(+) m6A CDS//exon//intron       24284625 chr6:144075029-144075030(+) m6A CDS//exon//intron       24284625 chr6:144075060-144075061(+) m6A exon//intron       24284625 chr6:144075104-144075105(+) m6A exon//intron       24284625 chr6:144075137-144075138(+) m6A exon//intron       24284625 chr6:144081759-144081760(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr6:144086420-144086421(+) m6A CDS//exon       24284625//25456834//24981863//27773535//22608085 chr6:144086492-144086493(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr6:144086513-144086514(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:144086522-144086523(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:144086543-144086544(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:144086580-144086581(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:144086627-144086628(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr6:144086647-144086648(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr6:144086653-144086654(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr6:144086682-144086683(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr6:144086787-144086788(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr6:144086841-144086842(+) m6A CDS       24284625 chr6:144095241-144095242(+) m6A CDS       24981863 chr6:144095253-144095254(+) m6A CDS       24981863 chr6:144095268-144095269(+) m6A CDS       24981863 chr6:144095276-144095277(+) m6A CDS       24981863//27773535 chr6:144095282-144095283(+) m6A CDS       24981863//27773535 chr6:144095338-144095339(+) m6A CDS//exon       24981863//27773535 chr6:144098508-144098509(+) m6A CDS//exon       24981863//27773535 chr6:144104374-144104375(+) m6A CDS//exon       24981863//27773535 chr6:144104392-144104393(+) m6A CDS//exon       24981863//27773535 chr6:144104404-144104405(+) m6A CDS//exon       24981863//27773535 chr6:144144837-144144838(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:144144848-144144849(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:144144854-144144855(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:144144890-144144891(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:144145067-144145068(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:144145119-144145120(+) m6A 3'UTR       24981863//27773535//22608085 chr6:144145318-144145319(+) m6A 3'UTR       24981863//22608085 chr6:144145368-144145369(+) m6A 3'UTR       24981863//22608085 chr6:144147685-144147686(+) m6A 3'UTR       24981863 chr6:144147690-144147691(+) m6A 3'UTR       24981863 chr6:144147702-144147703(+) m6A 3'UTR       24981863 chr6:144149207-144149208(+) m6A 3'UTR       24981863 chr6:144149266-144149267(+) m6A 3'UTR       24981863 chr6:144149276-144149277(+) m6A 3'UTR       24981863 chr6:144149377-144149378(+) m6A 3'UTR       24981863//27773535 chr6:144149415-144149416(+) m6A 3'UTR       24981863//27773535 chr6:144151415-144151416(+) Y 3'UTR       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PHACTR2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: PHACTR2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg