Basic Information:

  VIRBase ID:  

VHID00104613

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          VCAM1:  NM_001078     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	VCAM1
miRBase Accession/Entrez ID	MIMAT0012597	7412
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD106//INCAM-100

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VCAM1	chr1:101192764(+) A-I      intronic chr1:101192792(+) A-I      intronic chr1:101192447(+) A-I      intronic chr1:101192485(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VCAM1	chr1:101203646-101203647(+) m6A exon//intron       - chr1:101203687-101203688(+) m6A CDS//exon       - chr1:101203696-101203697(+) m6A CDS//exon       - chr1:101203865-101203866(+) m6A 3'UTR//exon       24981863 chr1:101203917-101203918(+) m6A 3'UTR//exon       24981863 chr1:101203936-101203937(+) m6A 3'UTR//exon       24981863 chr1:101203955-101203956(+) m6A 3'UTR//exon       24981863 chr1:101204011-101204012(+) m6A 3'UTR//exon       24981863 chr1:101204027-101204028(+) m6A 3'UTR//exon       24981863 chr1:101204053-101204054(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VCAM1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: VCAM1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg