Basic Information:

  VIRBase ID:  

VHID00104113

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          CACNA1E:  NM_001205294     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	CACNA1E
miRBase Accession/Entrez ID	MIMAT0012597	777
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BII//CACH6//CACNL1A6//Cav2.3//DEE69//EIEE69//gm139

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CACNA1E	chr1:181640359(+) A-I      intronic chr1:181600666(+) A-I      intronic chr1:181640263(+) A-I      intronic chr1:181640288(+) A-I      intronic chr1:181649128(+) A-I      intronic chr1:181638017(+) A-I      intronic chr1:181645657(+) A-I      intronic chr1:181584455(+) A-I      intronic chr1:181558796(+) A-I      intronic chr1:181654960(+) A-I      intronic chr1:181776281(+) A-I      3'UTR chr1:181643260(+) A-I      intronic chr1:181640319(+) A-I      intronic chr1:181643258(+) A-I      intronic chr1:181640239(+) A-I      intronic chr1:181640309(+) A-I      intronic chr1:181507065(+) A-I      intronic chr1:181507057(+) A-I      intronic chr1:181746183(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CACNA1E	chr1:181506472(+) C-T intron -    22484847 chr1:181638017(+) A-G intron -    22484847 chr1:181640319(+) A-G intron -    22484847 chr1:181738593(+) G-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CACNA1E	chr1:181452467-181452468(+) m6A exon//intron       - chr1:181452545-181452546(+) m6A exon//intron       - chr1:181452591-181452592(+) m6A exon//intron       - chr1:181452872-181452873(+) m6A 5'UTR//exon//intron       - chr1:181452932-181452933(+) m6A CDS//exon       - chr1:181452938-181452939(+) m6A CDS//exon       - chr1:181452950-181452951(+) m6A CDS//exon       - chr1:181452961-181452962(+) m6A CDS//exon       - chr1:181453024-181453025(+) m6A CDS//exon       - chr1:181453061-181453062(+) m6A CDS//exon       - chr1:181701806-181701807(+) m6A CDS       - chr1:181701824-181701825(+) m6A CDS       - chr1:181701835-181701836(+) m6A CDS       25456834 chr1:181701893-181701894(+) m6A CDS       25456834 chr1:181701950-181701951(+) m6A CDS       25456834 chr1:181702003-181702004(+) m6A CDS       - chr1:181702097-181702098(+) m6A CDS       - chr1:181767740-181767741(+) m6A CDS       - chr1:181767755-181767756(+) m6A CDS       - chr1:181768016-181768017(+) m6A 3'UTR       25456834 chr1:181768022-181768023(+) m6A 3'UTR       25456834 chr1:181768082-181768083(+) m6A 3'UTR       25456834 chr1:181768116-181768117(+) m6A 3'UTR       25456834 chr1:181768125-181768126(+) m6A 3'UTR       25456834 chr1:181768136-181768137(+) m6A 3'UTR       25456834 chr1:181768209-181768210(+) m6A 3'UTR       25456834 chr1:181768246-181768247(+) m6A 3'UTR       25456834 chr1:181768352-181768353(+) m6A 3'UTR       25456834 chr1:181768384-181768385(+) m6A 3'UTR       25456834 chr1:181768397-181768398(+) m6A 3'UTR       25456834 chr1:181768520-181768521(+) m6A 3'UTR       25456834 chr1:181768602-181768603(+) m6A 3'UTR       25456834 chr1:181768643-181768644(+) m6A 3'UTR       25456834 chr1:181768651-181768652(+) m6A 3'UTR       25456834 chr1:181768656-181768657(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CACNA1E	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: CACNA1E

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg