Basic Information:

  VIRBase ID:  

VHID00104085

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H8-5p:  MIMAT0012597          ARF6:  NM_001663     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H8-5p	ARF6
miRBase Accession/Entrez ID	MIMAT0012597	382
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARF6	chr14:50362863(+) A-I      3'UTR chr14:50362825(+) A-I      3'UTR chr14:50362850(+) A-I      3'UTR chr14:50362846(+) A-I      3'UTR chr14:50362839(+) A-I      3'UTR chr14:50362804(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARF6	chr14:50359819-50359820(+) m6A 5'UTR       24209618//25456834//24981863//22608085 chr14:50360137-50360138(+) m6A 5'UTR       24284625//24209618//27371828//22575960//22608085 chr14:50360410-50360411(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr14:50360417-50360418(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr14:50360485-50360486(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr14:50360532-50360533(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr14:50360656-50360657(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr14:50360694-50360695(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr14:50360719-50360720(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr14:50360827-50360828(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr14:50360846-50360847(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr14:50360867-50360868(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr14:50360890-50360891(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr14:50360896-50360897(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr14:50360936-50360937(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr14:50361024-50361025(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr14:50361091-50361092(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr14:50361236-50361237(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22608085 chr14:50361288-50361289(+) m6A 3'UTR       24284625//24981863//26404942//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARF6	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H8-5p
Interactor2: ARF6

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg