Detail Information

Basic Information:


  VIRBase ID:  

VHID00104025

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H7-3p:           COA5:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H7-3p COA5
miRBase
Accession/Entrez ID		 MIMAT0012596 493753
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - 6330578E17Rik//C2orf64//CEMCOX3//MC4DN9//Pet191

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR COA5
chr2:99219000(-) A-I      3'UTR
chr2:99218990(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED COA5
chr2:99218941(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase COA5
chr2:99216119-99216120(-) m6A 3'UTR       24981863
chr2:99216173-99216174(-) m6A 3'UTR       24981863
chr2:99216240-99216241(-) m6A 3'UTR       24981863
chr2:99216275-99216276(-) m6A 3'UTR       24981863
chr2:99216424-99216425(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr2:99216461-99216462(-) m6A 3'UTR       24284625//24981863//22608085
chr2:99216501-99216502(-) m6A 3'UTR       24284625//24981863//22608085
chr2:99216612-99216613(-) m6A 3'UTR       24284625
chr2:99216802-99216803(-) m6A 3'UTR       24981863//27773535//22608085
chr2:99216913-99216914(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr2:99216927-99216928(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr2:99216994-99216995(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr2:99217004-99217005(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:99217086-99217087(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:99217107-99217108(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:99217137-99217138(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:99217144-99217145(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:99217186-99217187(-) m6A 3'UTR//exon       24209618//24981863//27773535//27371828//22608085
chr2:99218906-99218907(-) m6A 3'UTR//intron       24209618//27773535//22608085
chr2:99220719-99220720(-) m6A exon//intron       25456834//22608085
chr2:99220734-99220735(-) m6A exon//intron       25456834//22608085
chr2:99224782-99224783(-) m6A CDS//exon       24981863//22608085
chr2:99224809-99224810(-) m6A CDS//exon       24284625//24981863//22608085
chr2:99224848-99224849(-) m6A CDS//exon       24284625//24981863//22608085
chr2:99224950-99224951(-) m6A 5'UTR//exon       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate COA5
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H7-3p
Interactor2: COA5

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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