Detail Information

Basic Information:


  VIRBase ID:  

VHID00103679

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H7-3p:           MMP28:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H7-3p MMP28
miRBase
Accession/Entrez ID		 MIMAT0012596 79148
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - EPILYSIN//MM28//MMP-25//MMP-28//MMP25

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MMP28
chr17:34118267(-) A-I      intronic
chr17:34118254(-) A-I      intronic
chr17:34120885(-) A-I      intronic
chr17:34118259(-) A-I      intronic
chr17:34118238(-) A-I      intronic
chr17:34121033(-) A-I      intronic
chr17:34109184(-) A-I      intronic
chr17:34109188(-) A-I      intronic
chr17:34102963(-) A-I      intronic
chr17:34109200(-) A-I      intronic
chr17:34103417(-) A-I      intronic
chr17:34103763(-) A-I      intronic
chr17:34109231(-) A-I      intronic
chr17:34103771(-) A-I      intronic
chr17:34121444(-) A-I      intronic
chr17:34121352(-) A-I      intronic
chr17:34120953(-) A-I      intronic
chr17:34120945(-) A-I      intronic
chr17:34118485(-) A-I      intronic
chr17:34118459(-) A-I      intronic
chr17:34118442(-) A-I      intronic
chr17:34103777(-) A-I      intronic
chr17:34116903(-) A-I      intronic
chr17:34118423(-) A-I      intronic
chr17:34117319(-) A-I      intronic
chr17:34117295(-) A-I      intronic
chr17:34116993(-) A-I      intronic
chr17:34116904(-) A-I      intronic
chr17:34103781(-) A-I      intronic
chr17:34115147(-) A-I      intronic
chr17:34115111(-) A-I      intronic
chr17:34114720(-) A-I      intronic
chr17:34114675(-) A-I      intronic
chr17:34114671(-) A-I      intronic
chr17:34113656(-) A-I      intronic
chr17:34113638(-) A-I      intronic
chr17:34103783(-) A-I      intronic
chr17:34103811(-) A-I      intronic
chr17:34103841(-) A-I      intronic
chr17:34104950(-) A-I      intronic
chr17:34107647(-) A-I      intronic
chr17:34107666(-) A-I      intronic
chr17:34107676(-) A-I      intronic
chr17:34107763(-) A-I      intronic
chr17:34107779(-) A-I      intronic
chr17:34109148(-) A-I      intronic
chr17:34113629(-) A-I      intronic
chr17:34109332(-) A-I      intronic
chr17:34116890(-) A-I      intronic
chr17:34103011(-) A-I      intronic
chr17:34109194(-) A-I      intronic
chr17:34103043(-) A-I      intronic
chr17:34107727(-) A-I      intronic
chr17:34118006(-) A-I      intronic
chr17:34103211(-) A-I      intronic
chr17:34117774(-) A-I      intronic
chr17:34109331(-) A-I      intronic
chr17:34103281(-) A-I      intronic
chr17:34117825(-) A-I      intronic
chr17:34111174(-) A-I      intronic
chr17:34104945(-) A-I      intronic
chr17:34117773(-) A-I      intronic
chr17:34115182(-) A-I      intronic
chr17:34120856(-) A-I      intronic
chr17:34115153(-) A-I      intronic
chr17:34103810(-) A-I      intronic
chr17:34103626(-) A-I      intronic
chr17:34103847(-) A-I      intronic
chr17:34104808(-) A-I      intronic
chr17:34103273(-) A-I      intronic
chr17:34103272(-) A-I      intronic
chr17:34104860(-) A-I      intronic
chr17:34116930(-) A-I      intronic
chr17:34115091(-) A-I      intronic
chr17:34103447(-) A-I      intronic
chr17:34117205(-) A-I      intronic
chr17:34110094(-) A-I      intronic
chr17:34103007(-) A-I      intronic
chr17:34120954(-) A-I      intronic
chr17:34102908(-) A-I      intronic
chr17:34104849(-) A-I      intronic
chr17:34118007(-) A-I      intronic
chr17:34103647(-) A-I      intronic
chr17:34103017(-) A-I      intronic
chr17:34107251(-) A-I      intronic
chr17:34107833(-) A-I      intronic
chr17:34118013(-) A-I      intronic
chr17:34104949(-) A-I      intronic
chr17:34117100(-) A-I      intronic
chr17:34103157(-) A-I      intronic
chr17:34113655(-) A-I      intronic
chr17:34103308(-) A-I      intronic
chr17:34117748(-) A-I      intronic
chr17:34118023(-) A-I      intronic
chr17:34120845(-) A-I      intronic
chr17:34103661(-) A-I      intronic
chr17:34121443(-) A-I      intronic
chr17:34105025(-) A-I      intronic
chr17:34113622(-) A-I      intronic
chr17:34103313(-) A-I      intronic
chr17:34103213(-) A-I      intronic
chr17:34103453(-) A-I      intronic
chr17:34103469(-) A-I      intronic
chr17:34115201(-) A-I      intronic
chr17:34118257(-) A-I      intronic
chr17:34120917(-) A-I      intronic
chr17:34118044(-) A-I      intronic
chr17:34118068(-) A-I      intronic
chr17:34102975(-) A-I      intronic
chr17:34120994(-) A-I      intronic
chr17:34103726(-) A-I      intronic
chr17:34103720(-) A-I      intronic
chr17:34103686(-) A-I      intronic
chr17:34115109(-) A-I      intronic
chr17:34104985(-) A-I      intronic
chr17:34120939(-) A-I      intronic
chr17:34115161(-) A-I      intronic
chr17:34117735(-) A-I      intronic
chr17:34113215(-) A-I      intronic
chr17:34110103(-) A-I      intronic
chr17:34103687(-) A-I      intronic
chr17:34118074(-) A-I      intronic
chr17:34114697(-) A-I      intronic
chr17:34103744(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MMP28
chr17:34083344-34083345(-) m6A 3'UTR       27773535
chr17:34083360-34083361(-) m6A 3'UTR       27773535
chr17:34083430-34083431(-) m6A 3'UTR       24981863//27773535
chr17:34092967-34092968(-) m6A intron       24981863//27773535
chr17:34092985-34092986(-) m6A intron       24981863//27773535
chr17:34093107-34093108(-) m6A intron       24981863//27773535
chr17:34093127-34093128(-) m6A intron       24981863//27773535
chr17:34093140-34093141(-) m6A intron       24981863//27773535
chr17:34093160-34093161(-) m6A intron       24981863//27773535
chr17:34093253-34093254(-) m6A 3'UTR//intron       24981863//27773535
chr17:34093411-34093412(-) m6A 3'UTR//intron       24981863
chr17:34093447-34093448(-) m6A 3'UTR//intron       24981863
chr17:34093496-34093497(-) m6A 3'UTR//intron       24981863
chr17:34093605-34093606(-) m6A 3'UTR//CDS//intron       24981863
chr17:34105718-34105719(-) m6A 3'UTR//exon//intron       24981863
chr17:34105737-34105738(-) m6A 3'UTR//exon//intron       24981863
chr17:34105753-34105754(-) m6A 3'UTR//exon//intron       24981863
chr17:34105805-34105806(-) m6A 3'UTR//exon//intron       24981863//22575960
chr17:34105810-34105811(-) m6A 3'UTR//exon//intron       24981863//22575960
chr17:34105825-34105826(-) m6A 3'UTR//exon//intron       24981863//22575960
chr17:34105927-34105928(-) m6A CDS//exon       24981863
chr17:34105934-34105935(-) m6A CDS//exon       24981863
chr17:34122506-34122507(-) m6A 5'UTR       27773536
chr17:34122514-34122515(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MMP28
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H7-3p
Interactor2: MMP28

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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