Basic Information:

  VIRBase ID:  

VHID00103298

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H7-3p:  MIMAT0012596          TSPAN1:  NM_005727     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H7-3p	TSPAN1
miRBase Accession/Entrez ID	MIMAT0012596	10103
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NET1//TM4C//TM4SF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TSPAN1	chr1:46642849(+) A-I      intronic chr1:46642848(+) A-I      intronic chr1:46642842(+) A-I      intronic chr1:46642831(+) A-I      intronic chr1:46642820(+) A-I      intronic chr1:46642808(+) A-I      intronic chr1:46642851(+) A-I      intronic chr1:46642854(+) A-I      intronic chr1:46648261(+) A-I      intronic chr1:46648198(+) A-I      intronic chr1:46642964(+) A-I      intronic chr1:46642892(+) A-I      intronic chr1:46642886(+) A-I      intronic chr1:46642829(+) A-I      intronic chr1:46642821(+) A-I      intronic chr1:46642828(+) A-I      intronic chr1:46648525(+) A-I      intronic chr1:46648262(+) A-I      intronic chr1:46648624(+) A-I      intronic chr1:46648144(+) A-I      intronic chr1:46648560(+) A-I      intronic chr1:46642932(+) A-I      intronic chr1:46648127(+) A-I      intronic chr1:46648332(+) A-I      intronic chr1:46648542(+) A-I      intronic chr1:46648113(+) A-I      intronic chr1:46648748(+) A-I      intronic chr1:46648126(+) A-I      intronic chr1:46648555(+) A-I      intronic chr1:46648761(+) A-I      intronic chr1:46648689(+) A-I      intronic chr1:46648339(+) A-I      intronic chr1:46648618(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TSPAN1	chr1:46648113(+) A-I intron -    21960545 chr1:46648126(+) A-I intron -    21960545 chr1:46648624(+) A-I intron -    21960545 chr1:46642932(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TSPAN1	chr1:46641509-46641510(+) m6A exon//intron       - chr1:46641514-46641515(+) m6A exon//intron       - chr1:46646305-46646306(+) m6A 5'UTR//exon//intron       - chr1:46646326-46646327(+) m6A 5'UTR//exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TSPAN1	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H7-3p
Interactor2: TSPAN1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg