Basic Information:

  VIRBase ID:  

VHID00101349

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H7-5p:  MIMAT0012595          SS18L1:  NR_125980     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H7-5p	SS18L1
miRBase Accession/Entrez ID	MIMAT0012595	26039
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CREST//LP2261

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SS18L1	chr20:60742548(+) A-I      intronic chr20:60745989(+) A-I      intronic chr20:60742502(+) A-I      intronic chr20:60742506(+) A-I      intronic chr20:60742519(+) A-I      intronic chr20:60742542(+) A-I      intronic chr20:60737141(+) A-I      intronic chr20:60737119(+) A-I      intronic chr20:60745468(+) A-I      intronic chr20:60737116(+) A-I      intronic chr20:60737100(+) A-I      intronic chr20:60737081(+) A-I      intronic chr20:60737067(+) A-I      intronic chr20:60737052(+) A-I      intronic chr20:60745451(+) A-I      intronic chr20:60745342(+) A-I      intronic chr20:60745333(+) A-I      intronic chr20:60743627(+) A-I      intronic chr20:60742538(+) A-I      intronic chr20:60742281(+) A-I      intronic chr20:60742258(+) A-I      intronic chr20:60741893(+) A-I      intronic chr20:60741821(+) A-I      intronic chr20:60741820(+) A-I      intronic chr20:60741805(+) A-I      intronic chr20:60753341(+) A-I      intronic chr20:60753296(+) A-I      intronic chr20:60753227(+) A-I      intronic chr20:60748669(+) A-I      intronic chr20:60748659(+) A-I      intronic chr20:60747055(+) A-I      intronic chr20:60747046(+) A-I      intronic chr20:60746175(+) A-I      intronic chr20:60746165(+) A-I      intronic chr20:60755831(+) A-I      3'UTR chr20:60755697(+) A-I      3'UTR chr20:60737634(+) A-I      ncRNA chr20:60755974(+) A-I      3'UTR chr20:60755824(+) A-I      3'UTR chr20:60755808(+) A-I      3'UTR chr20:60737130(+) A-I      intronic chr20:60751632(+) A-I      intronic chr20:60737225(+) A-I      intronic chr20:60744756(+) A-I      intronic chr20:60742429(+) A-I      intronic chr20:60751609(+) A-I      intronic chr20:60743076(+) A-I      intronic chr20:60741861(+) A-I      intronic chr20:60747202(+) A-I      intronic chr20:60741875(+) A-I      intronic chr20:60751449(+) A-I      intronic chr20:60753671(+) A-I      intronic chr20:60737461(+) A-I      intronic chr20:60742373(+) A-I      intronic chr20:60751319(+) A-I      intronic chr20:60751700(+) A-I      intronic chr20:60747165(+) A-I      intronic chr20:60744819(+) A-I      intronic chr20:60742965(+) A-I      intronic chr20:60751532(+) A-I      intronic chr20:60743121(+) A-I      intronic chr20:60745483(+) A-I      intronic chr20:60752881(+) A-I      intronic chr20:60741883(+) A-I      intronic chr20:60737091(+) A-I      intronic chr20:60751539(+) A-I      intronic chr20:60745482(+) A-I      intronic chr20:60746232(+) A-I      intronic chr20:60751408(+) A-I      intronic chr20:60742462(+) A-I      intronic chr20:60737121(+) A-I      intronic chr20:60746075(+) A-I      intronic chr20:60737123(+) A-I      intronic chr20:60742459(+) A-I      intronic chr20:60741870(+) A-I      intronic chr20:60746977(+) A-I      intronic chr20:60753319(+) A-I      intronic chr20:60753328(+) A-I      intronic chr20:60742284(+) A-I      intronic chr20:60742922(+) A-I      intronic chr20:60737199(+) A-I      intronic chr20:60742895(+) A-I      intronic chr20:60744664(+) A-I      intronic chr20:60755941(+) A-I      3'UTR chr20:60737127(+) A-I      intronic chr20:60751573(+) A-I      intronic chr20:60751808(+) A-I      intronic chr20:60737407(+) A-I      intronic chr20:60737229(+) A-I      intronic chr20:60737224(+) A-I      intronic chr20:60742205(+) A-I      intronic chr20:60746059(+) A-I      intronic chr20:60737594(+) A-I      intronic chr20:60744760(+) A-I      intronic chr20:60744790(+) A-I      intronic chr20:60737569(+) A-I      intronic chr20:60742266(+) A-I      intronic chr20:60737015(+) A-I      intronic chr20:60743684(+) A-I      intronic chr20:60737106(+) A-I      intronic chr20:60746124(+) A-I      intronic chr20:60742359(+) A-I      intronic chr20:60737497(+) A-I      intronic chr20:60746143(+) A-I      intronic chr20:60737115(+) A-I      intronic chr20:60737540(+) A-I      intronic chr20:60745455(+) A-I      intronic chr20:60746140(+) A-I      intronic chr20:60742461(+) A-I      intronic chr20:60741986(+) A-I      intronic chr20:60742460(+) A-I      intronic chr20:60741726(+) A-I      intronic chr20:60737118(+) A-I      intronic chr20:60742496(+) A-I      intronic chr20:60741816(+) A-I      intronic chr20:60746866(+) A-I      intronic chr20:60737044(+) A-I      intronic chr20:60741774(+) A-I      intronic chr20:60741994(+) A-I      intronic chr20:60737438(+) A-I      intronic chr20:60737124(+) A-I      intronic chr20:60747071(+) A-I      intronic chr20:60746819(+) A-I      intronic chr20:60737098(+) A-I      intronic chr20:60741960(+) A-I      intronic chr20:60737543(+) A-I      intronic chr20:60737156(+) A-I      intronic chr20:60743017(+) A-I      intronic chr20:60753771(+) A-I      intronic chr20:60741971(+) A-I      intronic chr20:60752340(+) A-I      intronic chr20:60737162(+) A-I      intronic chr20:60753652(+) A-I      intronic chr20:60751711(+) A-I      intronic chr20:60737099(+) A-I      intronic chr20:60737028(+) A-I      intronic chr20:60753248(+) A-I      intronic chr20:60743013(+) A-I      intronic chr20:60746893(+) A-I      intronic chr20:60751756(+) A-I      intronic chr20:60737112(+) A-I      intronic chr20:60744588(+) A-I      intronic chr20:60742497(+) A-I      intronic chr20:60751392(+) A-I      intronic chr20:60737422(+) A-I      intronic chr20:60753053(+) A-I      intronic chr20:60742989(+) A-I      intronic chr20:60737204(+) A-I      intronic chr20:60753750(+) A-I      intronic chr20:60741993(+) A-I      intronic chr20:60737457(+) A-I      intronic chr20:60753742(+) A-I      intronic chr20:60744688(+) A-I      intronic chr20:60751646(+) A-I      intronic chr20:60745994(+) A-I      intronic chr20:60742301(+) A-I      intronic chr20:60737622(+) A-I      ncRNA

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SS18L1	chr20:60737813(+) A-I exon CDS    19478186 chr20:60737130(+) A-I intron -    22327324 chr20:60737098(+) A-G intron -    22484847 chr20:60737117(+) A-G intron -    22484847 chr20:60737118(+) A-G intron -    22484847 chr20:60737123(+) A-G intron -    22484847 chr20:60737124(+) A-G intron -    22484847 chr20:60737127(+) A-G intron -    22484847 chr20:60737130(+) A-G intron -    22484847 chr20:60737225(+) A-G intron -    22484847 chr20:60737461(+) A-G intron -    22484847 chr20:60741726(+) A-G intron -    22484847 chr20:60742576(+) A-G intron -    22484847 chr20:60742965(+) A-G intron -    22484847 chr20:60743076(+) A-G intron -    22484847 chr20:60746977(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SS18L1	chr20:60718933-60718934(+) m6A 5'UTR//CDS       24284625//24981863 chr20:60729457-60729458(+) m6A 5'UTR//intron       - chr20:60729494-60729495(+) m6A 5'UTR//intron       - chr20:60729512-60729513(+) m6A 5'UTR//intron       - chr20:60733740-60733741(+) m6A 5'UTR//CDS       - chr20:60733827-60733828(+) m6A 5'UTR//intron       - chr20:60734955-60734956(+) m6A CDS       - chr20:60734982-60734983(+) m6A CDS       24981863 chr20:60734994-60734995(+) m6A CDS       24981863 chr20:60735073-60735074(+) Am intron       - chr20:60736504-60736505(+) m6A 5'UTR//CDS       24981863 chr20:60736510-60736511(+) m6A CDS       24981863 chr20:60737898-60737899(+) m6A CDS//exon       24284625 chr20:60737959-60737960(+) m6A CDS//exon       - chr20:60747740-60747741(+) m6A CDS       24209618 chr20:60749655-60749656(+) m6A CDS       - chr20:60755397-60755398(+) m6A 3'UTR       24981863 chr20:60755406-60755407(+) m6A 3'UTR       24981863 chr20:60755472-60755473(+) m6A 3'UTR       24981863 chr20:60756117-60756118(+) m6A 3'UTR       24981863 chr20:60756137-60756138(+) m6A 3'UTR       24981863 chr20:60756171-60756172(+) m6A 3'UTR       24981863 chr20:60756943-60756944(+) m6A 3'UTR       24284625 chr20:60757114-60757115(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr20:60757127-60757128(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr20:60757164-60757165(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr20:60757186-60757187(+) Y 3'UTR       26075521 chr20:60757202-60757203(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr20:60757229-60757230(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr20:60757265-60757266(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr20:60757325-60757326(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr20:60757364-60757365(+) m6A 3'UTR       24284625//24981863//27773535 chr20:60757396-60757397(+) m6A 3'UTR       24284625//27773535 chr20:60757443-60757444(+) m6A 3'UTR       24284625//27773535 chr20:60757522-60757523(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SS18L1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H7-5p
Interactor2: SS18L1

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg