Detail Information

Basic Information:


  VIRBase ID:  

VHID00101335

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H7-5p:           NSL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H7-5p NSL1
miRBase
Accession/Entrez ID		 MIMAT0012595 25936
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - C1orf48//DC8//MIS14

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NSL1
chr1:212905859(-) A-I      3'UTR
chr1:212920435(-) A-I      intronic
chr1:212921321(-) A-I      intronic
chr1:212921287(-) A-I      intronic
chr1:212921301(-) A-I      intronic
chr1:212905868(-) A-I      3'UTR
chr1:212916635(-) A-I      intronic
chr1:212930038(-) A-I      intronic
chr1:212949278(-) A-I      intronic
chr1:212905876(-) A-I      3'UTR
chr1:212929638(-) A-I      intronic
chr1:212916618(-) A-I      intronic
chr1:212905829(-) A-I      3'UTR
chr1:212929663(-) A-I      intronic
chr1:212921115(-) A-I      intronic
chr1:212929635(-) A-I      intronic
chr1:212949666(-) A-I      intronic
chr1:212905915(-) A-I      3'UTR
chr1:212949275(-) A-I      intronic
chr1:212930034(-) A-I      intronic
chr1:212921255(-) A-I      intronic
chr1:212921253(-) A-I      intronic
chr1:212921315(-) A-I      intronic
chr1:212929497(-) A-I      intronic
chr1:212929655(-) A-I      intronic
chr1:212929658(-) A-I      intronic
chr1:212905717(-) A-I      3'UTR
chr1:212916517(-) A-I      intronic
chr1:212905752(-) A-I      3'UTR
chr1:212929564(-) A-I      intronic
chr1:212929630(-) A-I      intronic
chr1:212916733(-) A-I      intronic
chr1:212949350(-) A-I      intronic
chr1:212921245(-) A-I      intronic
chr1:212949605(-) A-I      intronic
chr1:212929989(-) A-I      intronic
chr1:212920304(-) A-I      intronic
chr1:212929680(-) A-I      intronic
chr1:212922918(-) A-I      intronic
chr1:212949285(-) A-I      intronic
chr1:212929554(-) A-I      intronic
chr1:212949281(-) A-I      intronic
chr1:212929977(-) A-I      intronic
chr1:212905779(-) A-I      3'UTR
chr1:212949845(-) A-I      intronic
chr1:212906536(-) A-I      3'UTR
chr1:212904732(-) A-I      3'UTR
chr1:212904641(-) A-I      3'UTR
chr1:212905819(-) A-I      3'UTR
chr1:212920365(-) A-I      intronic
chr1:212906652(-) A-I      3'UTR
chr1:212929917(-) A-I      intronic
chr1:212949308(-) A-I      intronic
chr1:212929970(-) A-I      intronic
chr1:212921285(-) A-I      intronic
chr1:212929725(-) A-I      intronic
chr1:212905827(-) A-I      3'UTR
chr1:212929629(-) A-I      intronic
chr1:212949827(-) A-I      intronic
chr1:212906691(-) A-I      3'UTR
chr1:212906662(-) A-I      3'UTR
chr1:212906642(-) A-I      3'UTR
chr1:212916582(-) A-I      intronic
chr1:212903480(-) A-I      3'UTR
chr1:212949875(-) A-I      intronic
chr1:212921284(-) A-I      intronic
chr1:212921387(-) A-I      intronic
chr1:212905878(-) A-I      3'UTR
chr1:212921345(-) A-I      intronic
chr1:212930099(-) A-I      intronic
chr1:212921380(-) A-I      intronic
chr1:212930128(-) A-I      intronic
chr1:212921290(-) A-I      intronic
chr1:212905792(-) A-I      3'UTR
chr1:212929689(-) A-I      intronic
chr1:212909462(-) A-I      3'UTR
chr1:212949622(-) A-I      intronic
chr1:212909541(-) A-I      3'UTR
chr1:212962691(-) A-I      intronic
chr1:212949364(-) A-I      intronic
chr1:212909579(-) A-I      3'UTR
chr1:212949861(-) A-I      intronic
chr1:212905830(-) A-I      3'UTR
chr1:212905832(-) A-I      3'UTR
chr1:212905823(-) A-I      3'UTR
chr1:212929958(-) A-I      intronic
chr1:212903470(-) A-I      3'UTR
chr1:212949353(-) A-I      intronic
chr1:212909553(-) A-I      3'UTR
chr1:212920324(-) A-I      intronic
chr1:212934778(-) A-I      intronic
chr1:212912442(-) A-I      intronic
chr1:212906727(-) A-I      3'UTR
chr1:212906666(-) A-I      3'UTR
chr1:212906687(-) A-I      3'UTR
chr1:212905720(-) A-I      3'UTR
chr1:212905908(-) A-I      3'UTR
chr1:212904663(-) A-I      3'UTR
chr1:212949839(-) A-I      intronic
chr1:212918238(-) A-I      intronic
chr1:212929582(-) A-I      intronic
chr1:212921209(-) A-I      intronic
chr1:212921193(-) A-I      intronic
chr1:212906738(-) A-I      3'UTR
chr1:212904713(-) A-I      3'UTR
chr1:212929519(-) A-I      intronic
chr1:212904680(-) A-I      3'UTR
chr1:212904681(-) A-I      3'UTR
chr1:212930086(-) A-I      intronic
chr1:212929899(-) A-I      intronic
chr1:212916645(-) A-I      intronic
chr1:212904653(-) A-I      3'UTR
chr1:212963641(-) A-I      intronic
chr1:212905873(-) A-I      3'UTR
chr1:212904746(-) A-I      3'UTR
chr1:212929982(-) A-I      intronic
chr1:212963642(-) A-I      intronic
chr1:212905783(-) A-I      3'UTR
chr1:212909528(-) A-I      3'UTR
chr1:212949429(-) A-I      intronic
chr1:212920321(-) A-I      intronic
chr1:212945513(-) A-I      intronic
chr1:212930040(-) A-I      intronic
chr1:212906665(-) A-I      3'UTR
chr1:212906562(-) A-I      3'UTR
chr1:212938898(-) A-I      intronic
chr1:212929516(-) A-I      intronic
chr1:212904654(-) A-I      3'UTR
chr1:212962692(-) A-I      intronic
chr1:212921203(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NSL1
chr1:212905672(-) C-A exon 3'UTR    22484847
chr1:212905673(-) T-A exon 3'UTR    22484847
chr1:212905674(-) C-A exon 3'UTR    22484847
chr1:212905675(-) T-A exon 3'UTR    22484847
chr1:212905792(-) A-G exon 3'UTR    22484847
chr1:212905873(-) A-G exon 3'UTR    22484847
chr1:212906727(-) A-G exon 3'UTR    22484847
chr1:212909541(-) A-G exon 3'UTR    22484847
chr1:212909579(-) A-G exon 3'UTR    22484847
chr1:212921209(-) A-G intron -    22484847
chr1:212921345(-) A-G intron -    22484847
chr1:212922859(-) T-C intron -    22484847
chr1:212929554(-) A-G intron -    22484847
chr1:212929650(-) G-A intron -    22484847
chr1:212929689(-) A-G intron -    22484847
chr1:212929977(-) A-G intron -    22484847
chr1:212929982(-) A-G intron -    22484847
chr1:212929989(-) A-G intron -    22484847
chr1:212930040(-) A-G intron -    22484847
chr1:212930086(-) A-G intron -    22484847
chr1:212930099(-) A-G intron -    22484847
chr1:212930128(-) A-G intron -    22484847
chr1:212949281(-) A-G intron -    22484847
chr1:212949285(-) A-G intron -    22484847
chr1:212949308(-) A-G intron -    22484847
chr1:212949353(-) A-G intron -    22484847
chr1:212949364(-) A-G intron -    22484847
chr1:212949429(-) A-G intron -    22484847
chr1:212949839(-) A-G intron -    22484847
chr1:212949845(-) A-G intron -    22484847
chr1:212949861(-) A-G intron -    22484847
chr1:212949875(-) A-G intron -    22484847
chr1:212950447(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NSL1
chr1:212899630-212899631(-) m6A 3'UTR       27773535//22608085
chr1:212899692-212899693(-) m6A 3'UTR       27773535//22608085
chr1:212899697-212899698(-) m6A 3'UTR       27773535//22608085
chr1:212899711-212899712(-) m6A 3'UTR       27773535//22608085
chr1:212899733-212899734(-) m6A 3'UTR       27773535//22608085
chr1:212899752-212899753(-) m6A 3'UTR       27773535//22608085
chr1:212899793-212899794(-) m6A 3'UTR       25456834//27773535//22608085
chr1:212899853-212899854(-) m6A 3'UTR       25456834//27773535//22608085
chr1:212899879-212899880(-) m6A 3'UTR       25456834//27773535//22608085
chr1:212899900-212899901(-) m6A 3'UTR       25456834//27773535//22608085
chr1:212899909-212899910(-) m6A 3'UTR       25456834//27773535//22608085
chr1:212899945-212899946(-) m6A 3'UTR       25456834//27773535//27371828//22608085
chr1:212899958-212899959(-) m6A 3'UTR       25456834//27773535//27371828//22608085
chr1:212899971-212899972(-) m6A 3'UTR       25456834//27773535//27371828//22608085
chr1:212900046-212900047(-) m6A 3'UTR       24284625//25456834//27773535//27371828//27773536//22608085
chr1:212900071-212900072(-) m6A 3'UTR       24284625//25456834//27773535//27371828//27773536//22608085
chr1:212900109-212900110(-) m6A 3'UTR       24284625//25456834//27371828//27773536//22608085
chr1:212900141-212900142(-) m6A 3'UTR       24284625//25456834//27773536//22608085
chr1:212900214-212900215(-) m6A 3'UTR       24284625//25456834//27773536//22608085
chr1:212900233-212900234(-) m6A 3'UTR       24284625//25456834//27773536//22608085
chr1:212900280-212900281(-) m6A 3'UTR       24284625//25456834//27371828//27773536//22608085
chr1:212900330-212900331(-) m6A 3'UTR       25456834//27773536//22608085
chr1:212900350-212900351(-) m6A 3'UTR       25456834//27773536//22608085
chr1:212900355-212900356(-) m6A 3'UTR       25456834//27773536//22608085
chr1:212900437-212900438(-) m6A 3'UTR       25456834//27773536//22608085
chr1:212900463-212900464(-) m6A 3'UTR       25456834//22608085
chr1:212911670-212911671(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr1:212911807-212911808(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:212911814-212911815(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:212911844-212911845(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:212911859-212911860(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:212911874-212911875(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:212911894-212911895(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:212911902-212911903(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:212911914-212911915(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:212912007-212912008(-) m6A 3'UTR//CDS//intron       24284625//24981863//27773535//22608085
chr1:212912907-212912908(-) m6A CDS//intron       27773535//22608085
chr1:212955469-212955470(-) m6A exon//intron       27773535
chr1:212955551-212955552(-) m6A exon//intron       27773535
chr1:212955736-212955737(-) m6A CDS//exon       27773535
chr1:212957504-212957505(-) m6A exon//intron       24284625//27773535
chr1:212957562-212957563(-) m6A exon//intron       27773535
chr1:212957716-212957717(-) m6A CDS//exon       24981863
chr1:212957730-212957731(-) m6A CDS//exon       24981863
chr1:212965001-212965002(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085
chr1:212965061-212965062(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NSL1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H7-5p
Interactor2: NSL1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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