Detail Information

Basic Information:


  VIRBase ID:  

VHID00101274

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H7-5p:           ICMT:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H7-5p ICMT
miRBase
Accession/Entrez ID		 MIMAT0012595 23463
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - HSTE14//MST098//MSTP098//PCCMT//PCMT//PPMT

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ICMT
chr1:6288883(-) A-I      intronic
chr1:6282184(-) A-I      3'UTR
chr1:6282202(-) A-I      3'UTR
chr1:6283334(-) A-I      3'UTR
chr1:6283337(-) A-I      3'UTR
chr1:6283340(-) A-I      3'UTR
chr1:6283346(-) A-I      3'UTR
chr1:6283382(-) A-I      3'UTR
chr1:6283423(-) A-I      3'UTR
chr1:6288884(-) A-I      intronic
chr1:6283338(-) A-I      3'UTR
chr1:6283345(-) A-I      3'UTR
chr1:6288843(-) A-I      intronic
chr1:6288842(-) A-I      intronic
chr1:6288844(-) A-I      intronic
chr1:6286855(-) A-I      intronic
chr1:6288077(-) A-I      intronic
chr1:6288551(-) A-I      intronic
chr1:6288623(-) A-I      intronic
chr1:6288541(-) A-I      intronic
chr1:6288724(-) A-I      intronic
chr1:6288743(-) A-I      intronic
chr1:6289294(-) A-I      intronic
chr1:6289373(-) A-I      intronic
chr1:6289597(-) A-I      intronic
chr1:6289610(-) A-I      intronic
chr1:6288644(-) A-I      intronic
chr1:6289607(-) A-I      intronic
chr1:6290368(-) A-I      intronic
chr1:6290363(-) A-I      intronic
chr1:6290323(-) A-I      intronic
chr1:6290345(-) A-I      intronic
chr1:6290346(-) A-I      intronic
chr1:6282289(-) A-I      3'UTR
chr1:6283430(-) A-I      3'UTR
chr1:6282295(-) A-I      3'UTR
chr1:6283289(-) A-I      3'UTR
chr1:6283281(-) A-I      3'UTR
chr1:6283283(-) A-I      3'UTR
chr1:6282335(-) A-I      3'UTR
chr1:6283265(-) A-I      3'UTR
chr1:6283362(-) A-I      3'UTR
chr1:6283344(-) A-I      3'UTR
chr1:6283367(-) A-I      3'UTR
chr1:6282436(-) A-I      3'UTR
chr1:6283257(-) A-I      3'UTR
chr1:6282255(-) A-I      3'UTR
chr1:6282259(-) A-I      3'UTR
chr1:6283372(-) A-I      3'UTR
chr1:6283279(-) A-I      3'UTR
chr1:6282426(-) A-I      3'UTR
chr1:6283417(-) A-I      3'UTR
chr1:6283431(-) A-I      3'UTR
chr1:6283240(-) A-I      3'UTR
chr1:6290060(-) A-I      intronic
chr1:6291168(-) A-I      intronic
chr1:6289282(-) A-I      intronic
chr1:6286091(-) A-I      intronic
chr1:6290132(-) A-I      intronic
chr1:6288193(-) A-I      intronic
chr1:6283264(-) A-I      3'UTR
chr1:6282361(-) A-I      3'UTR
chr1:6289376(-) A-I      intronic
chr1:6283434(-) A-I      3'UTR
chr1:6283276(-) A-I      3'UTR
chr1:6282334(-) A-I      3'UTR
chr1:6282420(-) A-I      3'UTR
chr1:6288163(-) A-I      intronic
chr1:6283364(-) A-I      3'UTR
chr1:6283418(-) A-I      3'UTR
chr1:6282374(-) A-I      3'UTR
chr1:6283296(-) A-I      3'UTR
chr1:6289675(-) A-I      intronic
chr1:6283396(-) A-I      3'UTR
chr1:6288980(-) A-I      intronic
chr1:6282324(-) A-I      3'UTR
chr1:6288076(-) A-I      intronic
chr1:6283347(-) A-I      3'UTR
chr1:6283440(-) A-I      3'UTR
chr1:6283244(-) A-I      3'UTR
chr1:6282371(-) A-I      3'UTR
chr1:6283306(-) A-I      3'UTR
chr1:6286006(-) A-I      intronic
chr1:6283439(-) A-I      3'UTR
chr1:6283401(-) A-I      3'UTR
chr1:6283292(-) A-I      3'UTR
chr1:6282401(-) A-I      3'UTR
chr1:6282396(-) A-I      3'UTR
chr1:6283342(-) A-I      3'UTR
chr1:6288960(-) A-I      intronic
chr1:6286092(-) A-I      intronic
chr1:6282421(-) A-I      3'UTR
chr1:6288943(-) A-I      intronic
chr1:6282237(-) A-I      3'UTR
chr1:6282400(-) A-I      3'UTR
chr1:6290313(-) A-I      intronic
chr1:6291564(-) A-I      intronic
chr1:6283365(-) A-I      3'UTR
chr1:6282301(-) A-I      3'UTR
chr1:6291587(-) A-I      intronic
chr1:6283332(-) A-I      3'UTR
chr1:6282587(-) A-I      3'UTR
chr1:6287726(-) A-I      intronic
chr1:6283305(-) A-I      3'UTR
chr1:6283339(-) A-I      3'UTR
chr1:6283335(-) A-I      3'UTR
chr1:6289993(-) A-I      intronic
chr1:6290424(-) A-I      intronic
chr1:6282215(-) A-I      3'UTR
chr1:6282770(-) A-I      3'UTR
chr1:6283348(-) A-I      3'UTR
chr1:6282238(-) A-I      3'UTR
chr1:6283448(-) A-I      3'UTR
chr1:6286053(-) A-I      intronic
chr1:6290065(-) A-I      intronic
chr1:6282383(-) A-I      3'UTR
chr1:6282445(-) A-I      3'UTR
chr1:6289957(-) A-I      intronic
chr1:6289673(-) A-I      intronic
chr1:6282318(-) A-I      3'UTR
chr1:6290412(-) A-I      intronic
chr1:6282298(-) A-I      3'UTR
chr1:6290433(-) A-I      intronic
chr1:6282236(-) A-I      3'UTR
chr1:6288567(-) A-I      intronic
chr1:6283300(-) A-I      3'UTR
chr1:6282224(-) A-I      3'UTR
chr1:6282487(-) A-I      3'UTR
chr1:6283260(-) A-I      3'UTR
chr1:6290383(-) A-I      intronic
chr1:6282464(-) A-I      3'UTR
chr1:6283273(-) A-I      3'UTR
chr1:6283336(-) A-I      3'UTR
chr1:6283351(-) A-I      3'UTR
chr1:6282315(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ICMT
chr1:6282224(-) A-I exon 3'UTR    15342557   //15258596   //22327324
chr1:6282298(-) A-I exon 3'UTR    15342557   //15258596
chr1:6282315(-) A-I exon 3'UTR    15258596
chr1:6282318(-) A-I exon 3'UTR    15258596
chr1:6282324(-) A-I exon 3'UTR    15258596
chr1:6283260(-) A-I exon 3'UTR    15342557
chr1:6283342(-) A-I exon 3'UTR    15342557   //15258596
chr1:6283347(-) A-I exon 3'UTR    15342557   //15258596
chr1:6283348(-) A-I exon 3'UTR    15342557   //15258596
chr1:6283418(-) A-I exon 3'UTR    15342557   //15258596
chr1:6283439(-) A-I exon 3'UTR    15342557   //15258596   //22327324
chr1:6283440(-) A-I exon 3'UTR    15342557   //15258596   //22327324
chr1:6282236(-) A-I exon 3'UTR    22327324
chr1:6282587(-) A-I exon 3'UTR    22327324
chr1:6283306(-) A-I exon 3'UTR    22327324
chr1:6282224(-) A-G exon 3'UTR    21725310   //22484847
chr1:6283260(-) A-G exon 3'UTR    21725310   //22484847
chr1:6282236(-) A-G exon 3'UTR    22484847
chr1:6282238(-) A-G exon 3'UTR    22484847
chr1:6282271(-) T-C exon 3'UTR    22484847
chr1:6282301(-) A-G exon 3'UTR    22484847
chr1:6282324(-) A-G exon 3'UTR    22484847
chr1:6282383(-) A-G exon 3'UTR    22484847
chr1:6282400(-) A-G exon 3'UTR    22484847
chr1:6282401(-) A-G exon 3'UTR    22484847
chr1:6282420(-) A-G exon 3'UTR    22484847
chr1:6283244(-) A-G exon 3'UTR    22484847
chr1:6283264(-) A-G exon 3'UTR    22484847
chr1:6283296(-) A-G exon 3'UTR    22484847
chr1:6283305(-) A-G exon 3'UTR    22484847
chr1:6283306(-) A-G exon 3'UTR    22484847
chr1:6283348(-) A-G exon 3'UTR    22484847
chr1:6283365(-) A-G exon 3'UTR    22484847
chr1:6283439(-) A-G exon 3'UTR    22484847
chr1:6283440(-) A-G exon 3'UTR    22484847
chr1:6289076(-) T-C intron -    22484847
chr1:6290121(-) T-C intron -    22484847
chr1:6290313(-) A-G intron -    22484847
chr1:6290383(-) A-G intron -    22484847
chr1:6290424(-) A-G intron -    22484847
chr1:6291618(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ICMT
chr1:6281696-6281697(-) m6A 3'UTR       -
chr1:6282179-6282180(-) m6A 3'UTR//exon       24209618//27773535
chr1:6282190-6282191(-) m6A 3'UTR//exon       24209618//27773535
chr1:6282275-6282276(-) m6A 3'UTR//intron       24209618
chr1:6282483-6282484(-) m6A 3'UTR//intron       27773535
chr1:6282508-6282509(-) m6A 3'UTR//intron       27773535
chr1:6282924-6282925(-) Y 3'UTR//intron       25219674//26075521
chr1:6282942-6282943(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr1:6282949-6282950(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr1:6282983-6282984(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:6282996-6282997(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:6283018-6283019(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:6283047-6283048(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:6283112-6283113(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:6283149-6283150(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:6283158-6283159(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:6283179-6283180(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:6283194-6283195(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:6283263-6283264(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr1:6283280-6283281(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr1:6283361-6283362(-) m6A 3'UTR//intron       24209618//27773535//22608085
chr1:6283384-6283385(-) m6A 3'UTR//intron       24209618//27773535//22608085
chr1:6283471-6283472(-) m6A 3'UTR//intron       24209618//27773535//22608085
chr1:6283476-6283477(-) m6A 3'UTR//intron       24209618//27773535//22608085
chr1:6283632-6283633(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr1:6283717-6283718(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:6283727-6283728(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:6283784-6283785(-) m6A 3'UTR       24284625//24209618//24981863//27773536//22575960//22608085
chr1:6283800-6283801(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr1:6283934-6283935(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:6283940-6283941(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:6283945-6283946(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr1:6284138-6284139(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:6284194-6284195(-) m6A 3'UTR       24284625//24981863//22608085
chr1:6284282-6284283(-) m6A 3'UTR       24284625
chr1:6284639-6284640(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:6284678-6284679(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:6284684-6284685(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:6284782-6284783(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:6284800-6284801(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:6284856-6284857(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr1:6284929-6284930(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:6284978-6284979(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr1:6285002-6285003(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr1:6285083-6285084(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:6285088-6285089(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:6285146-6285147(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:6285252-6285253(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr1:6291966-6291967(-) m6A 3'UTR//CDS       24284625//24209618//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ICMT
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H7-5p
Interactor2: ICMT

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...