Detail Information

Basic Information:


  VIRBase ID:  

VHID00100955

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H7-5p:           EFCAB14:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H7-5p EFCAB14
miRBase
Accession/Entrez ID		 MIMAT0012595 9813
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - KIAA0494

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EFCAB14
chr1:47146847(-) A-I      intronic
chr1:47157192(-) A-I      intronic
chr1:47146904(-) A-I      intronic
chr1:47170085(-) A-I      intronic
chr1:47146855(-) A-I      intronic
chr1:47146877(-) A-I      intronic
chr1:47148504(-) A-I      intronic
chr1:47146830(-) A-I      intronic
chr1:47148491(-) A-I      intronic
chr1:47152544(-) A-I      intronic
chr1:47148470(-) A-I      intronic
chr1:47146808(-) A-I      intronic
chr1:47146813(-) A-I      intronic
chr1:47157186(-) A-I      intronic
chr1:47157189(-) A-I      intronic
chr1:47157179(-) A-I      intronic
chr1:47169890(-) A-I      intronic
chr1:47170047(-) A-I      intronic
chr1:47175577(-) A-I      intronic
chr1:47175602(-) A-I      intronic
chr1:47176335(-) A-I      intronic
chr1:47176350(-) A-I      intronic
chr1:47176371(-) A-I      intronic
chr1:47170127(-) A-I      intronic
chr1:47146887(-) A-I      intronic
chr1:47146881(-) A-I      intronic
chr1:47146873(-) A-I      intronic
chr1:47146782(-) A-I      intronic
chr1:47146721(-) A-I      intronic
chr1:47146705(-) A-I      intronic
chr1:47144560(-) A-I      intronic
chr1:47144577(-) A-I      intronic
chr1:47168929(-) A-I      intronic
chr1:47145408(-) A-I      intronic
chr1:47145388(-) A-I      intronic
chr1:47145386(-) A-I      intronic
chr1:47145375(-) A-I      intronic
chr1:47145345(-) A-I      intronic
chr1:47145343(-) A-I      intronic
chr1:47145212(-) A-I      intronic
chr1:47175597(-) A-I      intronic
chr1:47145137(-) A-I      intronic
chr1:47145105(-) A-I      intronic
chr1:47144623(-) A-I      intronic
chr1:47144592(-) A-I      intronic
chr1:47168942(-) A-I      intronic
chr1:47168946(-) A-I      intronic
chr1:47146882(-) A-I      intronic
chr1:47169047(-) A-I      intronic
chr1:47148439(-) A-I      intronic
chr1:47148513(-) A-I      intronic
chr1:47148632(-) A-I      intronic
chr1:47168849(-) A-I      intronic
chr1:47168858(-) A-I      intronic
chr1:47168867(-) A-I      intronic
chr1:47168919(-) A-I      intronic
chr1:47168926(-) A-I      intronic
chr1:47169928(-) A-I      intronic
chr1:47145087(-) A-I      intronic
chr1:47148533(-) A-I      intronic
chr1:47148656(-) A-I      intronic
chr1:47170019(-) A-I      intronic
chr1:47148607(-) A-I      intronic
chr1:47171701(-) A-I      intronic
chr1:47147358(-) A-I      intronic
chr1:47158155(-) A-I      intronic
chr1:47176364(-) A-I      intronic
chr1:47148524(-) A-I      intronic
chr1:47169716(-) A-I      intronic
chr1:47148631(-) A-I      intronic
chr1:47176422(-) A-I      intronic
chr1:47158072(-) A-I      intronic
chr1:47169957(-) A-I      intronic
chr1:47171567(-) A-I      intronic
chr1:47148548(-) A-I      intronic
chr1:47148530(-) A-I      intronic
chr1:47170102(-) A-I      intronic
chr1:47170025(-) A-I      intronic
chr1:47148611(-) A-I      intronic
chr1:47176510(-) A-I      intronic
chr1:47171603(-) A-I      intronic
chr1:47148582(-) A-I      intronic
chr1:47176515(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase EFCAB14
chr1:47131020-47131021(-) Y CDS       26075521
chr1:47133769-47133770(-) Y intron       26075521
chr1:47141401-47141402(-) Y 3'UTR//intron       26075521
chr1:47142387-47142388(-) m6A 3'UTR       24981863//27773535
chr1:47143018-47143019(-) m6A 3'UTR       24981863//26404942
chr1:47143110-47143111(-) m6A 3'UTR       24284625//24981863//26404942
chr1:47143833-47143834(-) m6A 3'UTR       27773535
chr1:47143959-47143960(-) m6A 3'UTR//exon       27773535
chr1:47144036-47144037(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr1:47144074-47144075(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr1:47144105-47144106(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//27371828//22608085
chr1:47144213-47144214(-) m6A 3'UTR//CDS//exon       24981863//27371828//22608085
chr1:47144239-47144240(-) m6A 3'UTR//CDS//exon       24981863//27371828
chr1:47144284-47144285(-) m6A 3'UTR//CDS//exon       24981863//27371828
chr1:47150174-47150175(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr1:47150203-47150204(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr1:47150229-47150230(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr1:47150760-47150761(-) m6A CDS//intron       24981863//27773535
chr1:47150782-47150783(-) m6A CDS//intron       24981863//27773535
chr1:47152484-47152485(-) m6A CDS//exon       24981863//27773535
chr1:47152512-47152513(-) m6A CDS//exon       24981863//27773535
chr1:47154040-47154041(-) m6A CDS//exon//intron       24981863
chr1:47154119-47154120(-) m6A CDS//exon//intron       24981863
chr1:47154138-47154139(-) m6A CDS//exon//intron       24981863
chr1:47154153-47154154(-) m6A CDS//exon//intron       24981863
chr1:47154178-47154179(-) m6A CDS//exon//intron       24981863
chr1:47155261-47155262(-) m6A CDS//exon       24981863
chr1:47155281-47155282(-) m6A CDS//exon       24981863
chr1:47182109-47182110(-) m6A CDS       27371828
chr1:47183640-47183641(-) m6A CDS       25456834//27371828
chr1:47183712-47183713(-) m6A CDS       25456834//27371828
chr1:47183804-47183805(-) m6A 5'UTR       24284625//25456834//24981863//27371828//22608085
chr1:47184172-47184173(-) Y 5'UTR       26075521
chr1:47184177-47184178(-) m6A 5'UTR       24209618//27773535
chr1:47184282-47184283(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:47184493-47184494(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr1:47184523-47184524(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr1:47184592-47184593(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536//22608085
chr1:47184599-47184600(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate EFCAB14
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H7-5p
Interactor2: EFCAB14

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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