Detail Information

Basic Information:


  VIRBase ID:  

VHID00100838

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H7-5p:           TIMELESS:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H7-5p TIMELESS
miRBase
Accession/Entrez ID		 MIMAT0012595 8914
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - hTIM//TIM//TIM1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TIMELESS
chr12:56810672(-) A-I      3'UTR
chr12:56810701(-) A-I      3'UTR
chr12:56810623(-) A-I      3'UTR
chr12:56810683(-) A-I      3'UTR
chr12:56810640(-) A-I      3'UTR
chr12:56810613(-) A-I      3'UTR
chr12:56819502(-) A-I      intronic
chr12:56832467(-) A-I      intronic
chr12:56832704(-) A-I      intronic
chr12:56832446(-) A-I      intronic
chr12:56832437(-) A-I      intronic
chr12:56832850(-) A-I      intronic
chr12:56833461(-) A-I      intronic
chr12:56832093(-) A-I      intronic
chr12:56832033(-) A-I      intronic
chr12:56831994(-) A-I      intronic
chr12:56834193(-) A-I      intronic
chr12:56831968(-) A-I      intronic
chr12:56834740(-) A-I      intronic
chr12:56834766(-) A-I      intronic
chr12:56834773(-) A-I      intronic
chr12:56834777(-) A-I      intronic
chr12:56834869(-) A-I      intronic
chr12:56835700(-) A-I      intronic
chr12:56831962(-) A-I      intronic
chr12:56835740(-) A-I      intronic
chr12:56821198(-) A-I      intronic
chr12:56839085(-) A-I      intronic
chr12:56839087(-) A-I      intronic
chr12:56839939(-) A-I      intronic
chr12:56840468(-) A-I      intronic
chr12:56840508(-) A-I      intronic
chr12:56840516(-) A-I      intronic
chr12:56840958(-) A-I      intronic
chr12:56840968(-) A-I      intronic
chr12:56842068(-) A-I      intronic
chr12:56842107(-) A-I      intronic
chr12:56842113(-) A-I      intronic
chr12:56842188(-) A-I      intronic
chr12:56821101(-) A-I      intronic
chr12:56832703(-) A-I      intronic
chr12:56821060(-) A-I      intronic
chr12:56820992(-) A-I      intronic
chr12:56820519(-) A-I      intronic
chr12:56819550(-) A-I      intronic
chr12:56819531(-) A-I      intronic
chr12:56834705(-) A-I      intronic
chr12:56820526(-) A-I      intronic
chr12:56832178(-) A-I      intronic
chr12:56819414(-) A-I      intronic
chr12:56839907(-) A-I      intronic
chr12:56810605(-) A-I      3'UTR
chr12:56810645(-) A-I      3'UTR
chr12:56810540(-) A-I      3'UTR
chr12:56810619(-) A-I      3'UTR
chr12:56810547(-) A-I      3'UTR
chr12:56839909(-) A-I      intronic
chr12:56819402(-) A-I      intronic
chr12:56833379(-) A-I      intronic
chr12:56819607(-) A-I      intronic
chr12:56830888(-) A-I      intronic
chr12:56838414(-) A-I      intronic
chr12:56832124(-) A-I      intronic
chr12:56835746(-) A-I      intronic
chr12:56842108(-) A-I      intronic
chr12:56834813(-) A-I      intronic
chr12:56833446(-) A-I      intronic
chr12:56832388(-) A-I      intronic
chr12:56839908(-) A-I      intronic
chr12:56839853(-) A-I      intronic
chr12:56831286(-) A-I      intronic
chr12:56835669(-) A-I      intronic
chr12:56830909(-) A-I      intronic
chr12:56819621(-) A-I      intronic
chr12:56821027(-) A-I      intronic
chr12:56830870(-) A-I      intronic
chr12:56838407(-) A-I      intronic
chr12:56840467(-) A-I      intronic
chr12:56834707(-) A-I      intronic
chr12:56821180(-) A-I      intronic
chr12:56833432(-) A-I      intronic
chr12:56831926(-) A-I      intronic
chr12:56839828(-) A-I      intronic
chr12:56834739(-) A-I      intronic
chr12:56839916(-) A-I      intronic
chr12:56819487(-) A-I      intronic
chr12:56830882(-) A-I      intronic
chr12:56837952(-) A-I      intronic
chr12:56810703(-) A-I      3'UTR
chr12:56810600(-) A-I      3'UTR
chr12:56810690(-) A-I      3'UTR
chr12:56810787(-) A-I      3'UTR
chr12:56810797(-) A-I      3'UTR
chr12:56810524(-) A-I      3'UTR
chr12:56810636(-) A-I      3'UTR
chr12:56810696(-) A-I      3'UTR
chr12:56810604(-) A-I      3'UTR
chr12:56810522(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TIMELESS
chr12:56830882(-) A-G intron -    22484847
chr12:56830888(-) A-G intron -    22484847
chr12:56830909(-) A-G intron -    22484847
chr12:56833432(-) A-G intron -    22484847
chr12:56833446(-) A-G intron -    22484847
chr12:56839828(-) A-G intron -    22484847
chr12:56839909(-) A-G intron -    22484847
chr12:56819487(-) A-G intron -    22484847
chr12:56819607(-) A-G intron -    22484847
chr12:56819621(-) A-G intron -    22484847
chr12:56820526(-) A-G intron -    22484847
chr12:56821027(-) A-G intron -    22484847
chr12:56821180(-) A-G intron -    22484847
chr12:56834813(-) A-G intron -    22484847
chr12:56835746(-) A-G intron -    22484847
chr12:56840467(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TIMELESS
chr12:56810385-56810386(-) m1A 3'UTR       26863410
chr12:56811175-56811176(-) m6A 3'UTR//exon       -
chr12:56811245-56811246(-) m6A 3'UTR//exon       24284625//24981863
chr12:56811332-56811333(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:56811351-56811352(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:56811397-56811398(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr12:56811419-56811420(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr12:56811469-56811470(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr12:56811695-56811696(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr12:56811718-56811719(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22608085
chr12:56811731-56811732(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//27773536//22608085
chr12:56812059-56812060(-) m6A CDS//exon       27773535//27773536
chr12:56812139-56812140(-) m6A CDS//exon       27773536
chr12:56814406-56814407(-) m6A CDS//exon       27773536
chr12:56814772-56814773(-) m6A CDS//exon       25456834//27371828
chr12:56814807-56814808(-) m6A CDS//exon       25456834//27371828//27773536
chr12:56814844-56814845(-) m6A CDS//exon       25456834//27371828//27773536//22575960
chr12:56814859-56814860(-) m6A CDS//exon       25456834//27371828//27773536//22575960
chr12:56814978-56814979(-) m6A exon//intron       27773535//22575960
chr12:56815212-56815213(-) m6A CDS//exon       27773535//22575960
chr12:56815344-56815345(-) m6A exon//intron       -
chr12:56815485-56815486(-) m6A exon//intron       24981863
chr12:56815494-56815495(-) m6A exon//intron       24981863
chr12:56815518-56815519(-) m6A CDS//exon       24981863
chr12:56815585-56815586(-) m6A CDS//exon       24981863//27773535
chr12:56815643-56815644(-) m6A exon//intron       27773535
chr12:56815691-56815692(-) m6A CDS//exon       27773535
chr12:56815901-56815902(-) Am CDS//exon       -
chr12:56817379-56817380(-) m6A CDS//intron       25456834//24981863
chr12:56817605-56817606(-) m6A CDS//exon       25456834//24981863//27773536
chr12:56817639-56817640(-) m6A CDS//exon       25456834//24981863//27773536
chr12:56818599-56818600(-) m6A CDS       27773536
chr12:56818677-56818678(-) m6A CDS       27773536
chr12:56827424-56827425(-) m6A CDS       -
chr12:56827583-56827584(-) m6A CDS       -
chr12:56827665-56827666(-) m6A CDS       -
chr12:56827870-56827871(-) m6A CDS       -
chr12:56827886-56827887(-) m6A CDS       -
chr12:56827927-56827928(-) m6A CDS       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TIMELESS
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H7-5p
Interactor2: TIMELESS

Evidence Support:


Prediction-Evidence miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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