Basic Information:

  VIRBase ID:  

VHID00099786

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          LRRC75A:  NM_001113567     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	LRRC75A
miRBase Accession/Entrez ID	MIMAT0008404	388341
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C17orf76//FAM211A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRRC75A	chr17:16381633(-) A-I      intronic chr17:16381651(-) A-I      intronic chr17:16381675(-) A-I      intronic chr17:16361193(-) A-I      intronic chr17:16381673(-) A-I      intronic chr17:16358526(-) A-I      intronic chr17:16358460(-) A-I      intronic chr17:16358446(-) A-I      intronic chr17:16356020(-) A-I      intronic chr17:16358322(-) A-I      intronic chr17:16356007(-) A-I      intronic chr17:16355919(-) A-I      intronic chr17:16355828(-) A-I      intronic chr17:16358466(-) A-I      intronic chr17:16358479(-) A-I      intronic chr17:16355914(-) A-I      intronic chr17:16387484(-) A-I      intronic chr17:16390891(-) A-I      intronic chr17:16380441(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRRC75A	chr17:16344914-16344915(-) m6A exon       26404942 chr17:16345085-16345086(-) m6A exon       26404942 chr17:16345109-16345110(-) m6A exon       26404942//27773535 chr17:16345155-16345156(-) m6A exon       26404942//27773535 chr17:16345182-16345183(-) m6A exon       26404942//27773535 chr17:16345237-16345238(-) m6A exon       27773535 chr17:16345274-16345275(-) m6A exon       27773535 chr17:16345319-16345320(-) m6A exon       27773535 chr17:16345394-16345395(-) m6A 3'UTR//exon       27773535 chr17:16345535-16345536(-) m6A 3'UTR//exon       27773535 chr17:16346562-16346563(-) m6A 3'UTR//exon       25456834//24981863//27773535 chr17:16346615-16346616(-) m6A 3'UTR//exon       25456834//24981863//27773535 chr17:16346649-16346650(-) m6A 3'UTR//exon       25456834//27773535 chr17:16346728-16346729(-) m6A 3'UTR//exon       24209618 chr17:16346762-16346763(-) m6A 3'UTR//exon       24209618 chr17:16346924-16346925(-) m6A 3'UTR//CDS//exon       25456834//24981863//27371828//27773536//22608085 chr17:16346944-16346945(-) m6A 3'UTR//CDS//exon       25456834//24981863//27371828//27773536//22608085 chr17:16346977-16346978(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr17:16346993-16346994(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr17:16347118-16347119(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27371828//27773536 chr17:16347322-16347323(-) m6A CDS//exon       25456834//27773536 chr17:16347370-16347371(-) m6A CDS//exon       27773536 chr17:16365629-16365630(-) m6A CDS       25456834 chr17:16365638-16365639(-) m6A CDS       25456834 chr17:16395188-16395189(-) m6A CDS       24209618//27773536 chr17:16395221-16395222(-) m6A CDS       24209618//27773536 chr17:16395288-16395289(-) m6A CDS       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRRC75A	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: LRRC75A

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg