Basic Information:

  VIRBase ID:  

VHID00099656

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          STK32C:  NM_001318881     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	STK32C
miRBase Accession/Entrez ID	MIMAT0008404	282974
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PKE//YANK3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	STK32C	chr10:134042461(-) A-I      intronic chr10:134028558(-) A-I      intronic chr10:134100958(-) A-I      intronic chr10:134101120(-) A-I      intronic chr10:134031804(-) A-I      intronic chr10:134031652(-) A-I      intronic chr10:134100829(-) A-I      intronic chr10:134100803(-) A-I      intronic chr10:134028638(-) A-I      intronic chr10:134028634(-) A-I      intronic chr10:134024008(-) A-I      intronic chr10:134099567(-) A-I      intronic chr10:134031823(-) A-I      intronic chr10:134031638(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	STK32C	chr10:134021217-134021218(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22608085 chr10:134021288-134021289(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr10:134021323-134021324(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr10:134021346-134021347(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr10:134021383-134021384(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr10:134021470-134021471(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr10:134021637-134021638(-) m6A CDS//exon       - chr10:134022561-134022562(-) m6A CDS//exon       - chr10:134022585-134022586(-) m6A CDS//exon       27773536 chr10:134036157-134036158(-) m6A CDS//exon       24284625//27773536 chr10:134036169-134036170(-) m6A CDS//exon       24284625//27773536 chr10:134036181-134036182(-) m6A CDS//exon       24284625//27773536 chr10:134036407-134036408(-) m6A CDS//exon       24284625//27773536 chr10:134036476-134036477(-) m6A CDS//exon       27773536 chr10:134038782-134038783(-) m6A CDS//exon       - chr10:134038804-134038805(-) m6A CDS//exon       - chr10:134040328-134040329(-) m6A CDS//exon       27773535//27773536 chr10:134040370-134040371(-) m6A CDS//exon       27773536 chr10:134040412-134040413(-) m6A CDS//exon       27773536 chr10:134040430-134040431(-) m6A CDS//exon       27773536 chr10:134040448-134040449(-) m6A CDS//exon       27773536 chr10:134041511-134041512(-) Gm CDS//exon       - chr10:134041576-134041577(-) m6A CDS//exon       - chr10:134041609-134041610(-) m6A 5'UTR//CDS//exon       - chr10:134041650-134041651(-) m6A CDS//intron       - chr10:134059455-134059456(-) m6A 5'UTR//CDS//exon       - chr10:134121344-134121345(-) m6A 5'UTR//intron       24981863 chr10:134137668-134137669(-) m6A 3'UTR//intron       27773535//22608085 chr10:134137674-134137675(-) m6A 3'UTR//intron       27773535//22608085 chr10:134137696-134137697(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr10:134137813-134137814(-) m6A CDS//intron       24981863//27773535//27773536//22608085 chr10:134137853-134137854(-) m6A CDS//intron       24981863//27773535//27773536//22608085 chr10:134143807-134143808(-) m6A 3'UTR//intron       25456834//24981863//27773535//27773536//22608085 chr10:134145008-134145009(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr10:134145030-134145031(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr10:134145183-134145184(-) m6A CDS       24284625//25456834//27371828//27773536 chr10:134145296-134145297(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	STK32C	Chromatin K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: STK32C

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg