Basic Information:

  VIRBase ID:  

VHID00099592

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          SLC16A9:  NM_001323981     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	SLC16A9
miRBase Accession/Entrez ID	MIMAT0008404	220963
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C10orf36//MCT9

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC16A9	chr10:61453516(-) A-I      intronic chr10:61453510(-) A-I      intronic chr10:61453572(-) A-I      intronic chr10:61453550(-) A-I      intronic chr10:61453542(-) A-I      intronic chr10:61447704(-) A-I      intronic chr10:61447527(-) A-I      intronic chr10:61454451(-) A-I      intronic chr10:61454450(-) A-I      intronic chr10:61454447(-) A-I      intronic chr10:61447685(-) A-I      intronic chr10:61454356(-) A-I      intronic chr10:61446803(-) A-I      intronic chr10:61458634(-) A-I      intronic chr10:61463018(-) A-I      intronic chr10:61458571(-) A-I      intronic chr10:61446936(-) A-I      intronic chr10:61447501(-) A-I      intronic chr10:61447596(-) A-I      intronic chr10:61447623(-) A-I      intronic chr10:61447480(-) A-I      intronic chr10:61446935(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC16A9	chr10:61412019-61412020(-) m6A 3'UTR       24284625//27773535 chr10:61412056-61412057(-) m6A 3'UTR       24284625//24981863//27773535 chr10:61412063-61412064(-) m6A 3'UTR       24284625//24981863//27773535 chr10:61412164-61412165(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr10:61412299-61412300(-) m6A 3'UTR       24284625//27773535//22608085 chr10:61412386-61412387(-) Y 3'UTR       26075521 chr10:61412439-61412440(-) m6A 3'UTR       24981863//27773535 chr10:61412514-61412515(-) m6A 3'UTR       27773535 chr10:61412684-61412685(-) m6A CDS       22608085 chr10:61412690-61412691(-) m6A CDS       22608085 chr10:61413445-61413446(-) m6A CDS       24284625//22608085 chr10:61413463-61413464(-) m6A CDS       24284625//24981863//22608085 chr10:61413519-61413520(-) m6A CDS       24284625//24981863//27773535//22608085 chr10:61413712-61413713(-) m6A CDS       27773535//22608085 chr10:61413875-61413876(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:61413894-61413895(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:61413908-61413909(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:61413943-61413944(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:61413961-61413962(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:61414016-61414017(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:61414034-61414035(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr10:61414039-61414040(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr10:61414106-61414107(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:61414112-61414113(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:61414216-61414217(-) m6A CDS       24284625//22608085 chr10:61444043-61444044(-) m6A CDS//exon       27773536 chr10:61468412-61468413(-) m6A exon//intron       27773536 chr10:61468482-61468483(-) m6A exon//intron       27773536 chr10:61469418-61469419(-) m6A 5'UTR//intron       27773536 chr10:61469551-61469552(-) m6A 5'UTR//intron       25456834//24981863//27773536//22608085 chr10:61469563-61469564(-) m6A 5'UTR//intron       25456834//24981863//27773536//22608085 chr10:61469578-61469579(-) m6A 5'UTR//intron       25456834//24981863//27773536//22608085 chr10:61469605-61469606(-) m6A 5'UTR//intron       25456834//24981863//27773536//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC16A9	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: SLC16A9

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg