Basic Information:

  VIRBase ID:  

VHID00099467

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          LSM14B:  NM_144703     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	LSM14B
miRBase Accession/Entrez ID	MIMAT0008404	149986
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bA11M20.3//C20orf40//FAM61B//FT005//LSM13//RAP55B

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LSM14B	chr20:60700956(+) A-I      intronic chr20:60700036(+) A-I      intronic chr20:60700963(+) A-I      intronic chr20:60700960(+) A-I      intronic chr20:60700066(+) A-I      intronic chr20:60700006(+) A-I      intronic chr20:60700120(+) A-I      intronic chr20:60700137(+) A-I      intronic chr20:60700073(+) A-I      intronic chr20:60700112(+) A-I      intronic chr20:60700134(+) A-I      intronic chr20:60701058(+) A-I      intronic chr20:60700146(+) A-I      intronic chr20:60700157(+) A-I      intronic chr20:60700901(+) A-I      intronic chr20:60700906(+) A-I      intronic chr20:60700914(+) A-I      intronic chr20:60700957(+) A-I      intronic chr20:60700964(+) A-I      intronic chr20:60700965(+) A-I      intronic chr20:60700966(+) A-I      intronic chr20:60700196(+) A-I      intronic chr20:60700001(+) A-I      intronic chr20:60700995(+) A-I      intronic chr20:60700915(+) A-I      intronic chr20:60700951(+) A-I      intronic chr20:60700996(+) A-I      intronic chr20:60700940(+) A-I      intronic chr20:60701813(+) A-I      intronic chr20:60700076(+) A-I      intronic chr20:60701891(+) A-I      intronic chr20:60700037(+) A-I      intronic chr20:60701005(+) A-I      intronic chr20:60700939(+) A-I      intronic chr20:60700017(+) A-I      intronic chr20:60700954(+) A-I      intronic chr20:60700955(+) A-I      intronic chr20:60700861(+) A-I      intronic chr20:60700203(+) A-I      intronic chr20:60701998(+) A-I      intronic chr20:60700969(+) A-I      intronic chr20:60700111(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LSM14B	chr20:60700995(+) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LSM14B	chr20:60699787-60699788(+) m6A 5'UTR//CDS       - chr20:60701285-60701286(+) m6A CDS//intron       - chr20:60705325-60705326(+) m6A CDS//intron       22575960 chr20:60705332-60705333(+) m6A CDS//intron       22575960 chr20:60705588-60705589(+) m6A CDS       22575960 chr20:60705596-60705597(+) m6A CDS       22575960 chr20:60705621-60705622(+) m6A CDS       22575960 chr20:60705645-60705646(+) m6A CDS       24981863//27773535 chr20:60705733-60705734(+) m6A CDS       27773535 chr20:60706550-60706551(+) m6A CDS       24284625//24209618 chr20:60706557-60706558(+) m6A CDS       24284625//24209618 chr20:60708368-60708369(+) Am CDS       - chr20:60708391-60708392(+) m6A CDS       24284625//24209618 chr20:60708466-60708467(+) m6A CDS       24284625//24209618 chr20:60708502-60708503(+) m6A CDS       24284625//24209618 chr20:60709324-60709325(+) m6A 3'UTR       24284625//24209618//24981863 chr20:60709349-60709350(+) m6A 3'UTR       24284625//24209618//24981863 chr20:60709359-60709360(+) m6A 3'UTR       24284625//24209618//24981863 chr20:60709365-60709366(+) m6A 3'UTR       24284625//24209618//24981863 chr20:60709382-60709383(+) m6A 3'UTR       24284625//24209618//24981863 chr20:60709774-60709775(+) m6A 3'UTR       - chr20:60709779-60709780(+) m6A 3'UTR       - chr20:60709836-60709837(+) m6A 3'UTR       - chr20:60710016-60710017(+) m6A 3'UTR       24284625 chr20:60710053-60710054(+) m6A 3'UTR       24284625 chr20:60710262-60710263(+) m6A 3'UTR       24209618 chr20:60710338-60710339(+) m6A 3'UTR       24209618//27773535 chr20:60710359-60710360(+) m6A 3'UTR       24209618//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LSM14B	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: LSM14B

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg