Basic Information:

  VIRBase ID:  

VHID00099463

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          SHISA4:  NR_030775     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	SHISA4
miRBase Accession/Entrez ID	MIMAT0008404	149345
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf40//TMEM58

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SHISA4	chr1:201857834-201857835(+) m6A exon       25456834 chr1:201857852-201857853(+) m6A 5'UTR//exon       25456834 chr1:201857930-201857931(+) m6A 5'UTR//intron       24981863 chr1:201858434-201858435(+) m6A exon//intron       - chr1:201858449-201858450(+) m6A exon//intron       - chr1:201860585-201860586(+) m6A CDS//exon       24284625 chr1:201860977-201860978(+) m6A 3'UTR//exon       24284625 chr1:201861090-201861091(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:201861119-201861120(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:201861140-201861141(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:201861151-201861152(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:201861157-201861158(+) m6A 3'UTR//exon       24284625//25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SHISA4	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: SHISA4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg