Detail Information

Basic Information:


  VIRBase ID:  

VHID00099243

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:           SFXN5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H6-3p SFXN5
miRBase
Accession/Entrez ID		 MIMAT0008404 94097
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - BBG-TCC//SLC56A5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SFXN5
chr2:73204899(-) A-I      intronic
chr2:73293575(-) A-I      intronic
chr2:73196114(-) A-I      intronic
chr2:73196120(-) A-I      intronic
chr2:73238304(-) A-I      intronic
chr2:73238275(-) A-I      intronic
chr2:73196088(-) A-I      intronic
chr2:73196111(-) A-I      intronic
chr2:73238307(-) A-I      intronic
chr2:73238311(-) A-I      intronic
chr2:73238315(-) A-I      intronic
chr2:73296393(-) A-I      intronic
chr2:73238343(-) A-I      intronic
chr2:73238347(-) A-I      intronic
chr2:73238354(-) A-I      intronic
chr2:73238363(-) A-I      intronic
chr2:73275591(-) A-I      intronic
chr2:73275601(-) A-I      intronic
chr2:73275611(-) A-I      intronic
chr2:73205549(-) A-I      intronic
chr2:73205540(-) A-I      intronic
chr2:73292705(-) A-I      intronic
chr2:73292697(-) A-I      intronic
chr2:73292008(-) A-I      intronic
chr2:73288354(-) A-I      intronic
chr2:73288202(-) A-I      intronic
chr2:73283205(-) A-I      intronic
chr2:73287869(-) A-I      intronic
chr2:73282906(-) A-I      intronic
chr2:73282884(-) A-I      intronic
chr2:73282874(-) A-I      intronic
chr2:73282870(-) A-I      intronic
chr2:73275636(-) A-I      intronic
chr2:73257033(-) A-I      intronic
chr2:73275512(-) A-I      intronic
chr2:73275444(-) A-I      intronic
chr2:73269055(-) A-I      intronic
chr2:73257018(-) A-I      intronic
chr2:73256926(-) A-I      intronic
chr2:73251371(-) A-I      intronic
chr2:73251329(-) A-I      intronic
chr2:73251290(-) A-I      intronic
chr2:73275454(-) A-I      intronic
chr2:73243061(-) A-I      intronic
chr2:73225086(-) A-I      intronic
chr2:73205685(-) A-I      intronic
chr2:73205644(-) A-I      intronic
chr2:73205620(-) A-I      intronic
chr2:73205613(-) A-I      intronic
chr2:73205631(-) A-I      intronic
chr2:73282941(-) A-I      intronic
chr2:73292627(-) A-I      intronic
chr2:73205582(-) A-I      intronic
chr2:73282897(-) A-I      intronic
chr2:73275443(-) A-I      intronic
chr2:73196743(-) A-I      intronic
chr2:73292556(-) A-I      intronic
chr2:73292004(-) A-I      intronic
chr2:73293872(-) A-I      intronic
chr2:73284406(-) A-I      intronic
chr2:73292722(-) A-I      intronic
chr2:73292644(-) A-I      intronic
chr2:73265625(-) A-I      intronic
chr2:73269103(-) A-I      intronic
chr2:73288026(-) A-I      intronic
chr2:73283085(-) A-I      intronic
chr2:73268996(-) A-I      intronic
chr2:73206680(-) A-I      intronic
chr2:73251541(-) A-I      intronic
chr2:73278493(-) A-I      intronic
chr2:73283155(-) A-I      intronic
chr2:73204938(-) A-I      intronic
chr2:73292626(-) A-I      intronic
chr2:73292429(-) A-I      intronic
chr2:73278484(-) A-I      intronic
chr2:73246696(-) A-I      intronic
chr2:73294091(-) A-I      intronic
chr2:73288329(-) A-I      intronic
chr2:73287860(-) A-I      intronic
chr2:73287898(-) A-I      intronic
chr2:73282930(-) A-I      intronic
chr2:73280301(-) A-I      intronic
chr2:73205576(-) A-I      intronic
chr2:73256944(-) A-I      intronic
chr2:73283018(-) A-I      intronic
chr2:73275548(-) A-I      intronic
chr2:73284513(-) A-I      intronic
chr2:73214652(-) A-I      intronic
chr2:73288290(-) A-I      intronic
chr2:73214808(-) A-I      intronic
chr2:73288035(-) A-I      intronic
chr2:73245221(-) A-I      intronic
chr2:73254948(-) A-I      intronic
chr2:73214762(-) A-I      intronic
chr2:73282861(-) A-I      intronic
chr2:73284328(-) A-I      intronic
chr2:73292503(-) A-I      intronic
chr2:73204900(-) A-I      intronic
chr2:73196218(-) A-I      intronic
chr2:73292935(-) A-I      intronic
chr2:73292979(-) A-I      intronic
chr2:73205020(-) A-I      intronic
chr2:73204901(-) A-I      intronic
chr2:73287927(-) A-I      intronic
chr2:73204874(-) A-I      intronic
chr2:73204886(-) A-I      intronic
chr2:73251529(-) A-I      intronic
chr2:73214821(-) A-I      intronic
chr2:73288102(-) A-I      intronic
chr2:73251655(-) A-I      intronic
chr2:73287934(-) A-I      intronic
chr2:73293885(-) A-I      intronic
chr2:73289040(-) A-I      intronic
chr2:73280181(-) A-I      intronic
chr2:73243060(-) A-I      intronic
chr2:73292668(-) A-I      intronic
chr2:73243751(-) A-I      intronic
chr2:73287916(-) A-I      intronic
chr2:73242699(-) A-I      intronic
chr2:73283399(-) A-I      intronic
chr2:73280289(-) A-I      intronic
chr2:73282794(-) A-I      intronic
chr2:73214630(-) A-I      intronic
chr2:73214642(-) A-I      intronic
chr2:73283135(-) A-I      intronic
chr2:73251285(-) A-I      intronic
chr2:73275482(-) A-I      intronic
chr2:73288025(-) A-I      intronic
chr2:73292269(-) A-I      intronic
chr2:73293565(-) A-I      intronic
chr2:73289041(-) A-I      intronic
chr2:73245169(-) A-I      intronic
chr2:73251423(-) A-I      intronic
chr2:73292665(-) A-I      intronic
chr2:73245254(-) A-I      intronic
chr2:73283143(-) A-I      intronic
chr2:73287957(-) A-I      intronic
chr2:73205055(-) A-I      intronic
chr2:73284365(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SFXN5
chr2:73224182(-) A-I intron -    19478186
chr2:73224190(-) A-I intron -    19478186
chr2:73254948(-) A-I intron -    15342557
chr2:73255190(-) A-I intron -    15342557
chr2:73255195(-) A-I intron -    15342557
chr2:73255210(-) A-I intron -    15342557
chr2:73255254(-) A-I intron -    15342557
chr2:73255272(-) A-I intron -    15342557
chr2:73255289(-) A-I intron -    15342557
chr2:73255302(-) A-I intron -    15342557
chr2:73255318(-) A-I intron -    15342557
chr2:73255326(-) A-I intron -    15342557
chr2:73255328(-) A-I intron -    15342557
chr2:73204886(-) A-G intron -    22484847
chr2:73204987(-) A-G intron -    22484847
chr2:73205020(-) A-G intron -    22484847
chr2:73205021(-) A-G intron -    22484847
chr2:73205055(-) A-G intron -    22484847
chr2:73205631(-) A-G intron -    22484847
chr2:73214652(-) A-G intron -    22484847
chr2:73214762(-) A-G intron -    22484847
chr2:73214879(-) A-G intron -    22484847
chr2:73242699(-) A-G intron -    22484847
chr2:73242700(-) A-G intron -    22484847
chr2:73242966(-) A-G intron -    22484847
chr2:73251309(-) A-G intron -    22484847
chr2:73251423(-) A-G intron -    22484847
chr2:73251655(-) A-G intron -    22484847
chr2:73265698(-) A-G intron -    22484847
chr2:73283143(-) A-G intron -    22484847
chr2:73283145(-) A-G intron -    22484847
chr2:73287898(-) A-G intron -    22484847
chr2:73288290(-) A-G intron -    22484847
chr2:73292676(-) A-G intron -    22484847
chr2:73292979(-) A-G intron -    22484847
chr2:73293885(-) A-G intron -    22484847
chr2:73293886(-) A-G intron -    22484847
chr2:73293947(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SFXN5
chr2:73169336-73169337(-) m6A 3'UTR//exon       25456834//27773535
chr2:73169430-73169431(-) m6A 3'UTR//exon       25456834//27773535
chr2:73169472-73169473(-) m6A 3'UTR//exon       27773535
chr2:73169494-73169495(-) m6A 3'UTR//exon       27773535
chr2:73169535-73169536(-) m6A 3'UTR//exon       25456834//27773535//27371828
chr2:73169604-73169605(-) m6A 3'UTR//exon       25456834//27773536
chr2:73169639-73169640(-) m6A 3'UTR//exon       25456834//27773536
chr2:73169736-73169737(-) m6A 3'UTR//exon       25456834
chr2:73169750-73169751(-) m6A 3'UTR//exon       25456834
chr2:73169792-73169793(-) m6A 3'UTR//exon       -
chr2:73170004-73170005(-) m6A 3'UTR//exon       27773535
chr2:73170010-73170011(-) m6A 3'UTR//exon       27773535
chr2:73170112-73170113(-) m6A 3'UTR//exon       27773535
chr2:73170225-73170226(-) m6A 3'UTR//exon       -
chr2:73170230-73170231(-) m6A 3'UTR//exon       -
chr2:73170243-73170244(-) m6A 3'UTR//exon       -
chr2:73170664-73170665(-) m6A 3'UTR//exon       27773535
chr2:73170799-73170800(-) m6A 3'UTR//exon       25456834//24981863//27773535//22608085
chr2:73170876-73170877(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22608085
chr2:73170902-73170903(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr2:73170909-73170910(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr2:73170968-73170969(-) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr2:73171005-73171006(-) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr2:73171013-73171014(-) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr2:73171055-73171056(-) m6A 3'UTR//exon       25456834
chr2:73171131-73171132(-) m6A 3'UTR//exon       24284625//25456834
chr2:73171246-73171247(-) m6A 3'UTR//exon       25456834//24981863//27773535//22608085
chr2:73171328-73171329(-) m6A 3'UTR//exon       25456834//24981863//22608085
chr2:73171335-73171336(-) m6A 3'UTR//exon       25456834//24981863//22608085
chr2:73171364-73171365(-) m6A 3'UTR//exon       25456834//22608085
chr2:73171594-73171595(-) m6A 3'UTR//exon       24284625
chr2:73171742-73171743(-) m6A 3'UTR//exon       24981863
chr2:73171999-73172000(-) m6A 3'UTR//exon       24284625//25456834//24981863
chr2:73172086-73172087(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//22608085
chr2:73172176-73172177(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535
chr2:73172221-73172222(-) m6A CDS//exon       27773535
chr2:73184147-73184148(-) m6A exon//intron       27773535
chr2:73184179-73184180(-) m6A exon//intron       27773535
chr2:73221992-73221993(-) m6A exon//intron       27773535
chr2:73246584-73246585(-) m6A exon//intron       27773535
chr2:73246653-73246654(-) m6A exon//intron       27773535
chr2:73249688-73249689(-) m6A CDS//exon//intron       -
chr2:73267985-73267986(-) m6A 3'UTR//CDS//exon       -
chr2:73268011-73268012(-) m6A 3'UTR//CDS//exon       -
chr2:73268025-73268026(-) m6A CDS//exon       -
chr2:73276790-73276791(-) m6A exon//intron       27773535
chr2:73276861-73276862(-) m6A exon//intron       24981863//27773535
chr2:73276930-73276931(-) m6A exon//intron       24981863//27773535//22608085
chr2:73276943-73276944(-) m6A exon//intron       24981863//27773535//22608085
chr2:73280503-73280504(-) m6A exon//intron       27773535
chr2:73280543-73280544(-) m6A exon//intron       24981863//27773535
chr2:73280645-73280646(-) m6A exon//intron       27773535
chr2:73297690-73297691(-) m6A exon//intron       27773536
chr2:73297741-73297742(-) m6A exon//intron       27773536
chr2:73297776-73297777(-) m6A exon//intron       27371828//27773536
chr2:73297829-73297830(-) m6A exon//intron       27371828//27773536
chr2:73297862-73297863(-) m6A exon//intron       27773536
chr2:73297927-73297928(-) m6A exon//intron       27773536
chr2:73298001-73298002(-) m6A exon//intron       27773536
chr2:73298747-73298748(-) m6A CDS//exon//intron       24981863
chr2:73298872-73298873(-) m6A 5'UTR//intron       24981863
chr2:73302023-73302024(-) m6A intron       -
chr2:73302187-73302188(-) m6A intron       24284625//24209618//24981863//27773535
chr2:73302307-73302308(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr2:73302312-73302313(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:73302338-73302339(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:73302353-73302354(-) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:73302367-73302368(-) m6A intron       24284625//24209618//25456834//24981863//27773535//22608085
chr2:73302581-73302582(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:73302612-73302613(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:73302692-73302693(-) m6A intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SFXN5
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H6-3p
Interactor2: SFXN5

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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