Basic Information:

  VIRBase ID:  

VHID00099211

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          MYADM:  NM_001290194     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	MYADM
miRBase Accession/Entrez ID	MIMAT0008404	91663
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SB135

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MYADM	chr19:54379054(+) A-I      3'UTR chr19:54378889(+) A-I      3'UTR chr19:54378893(+) A-I      3'UTR chr19:54378901(+) A-I      3'UTR chr19:54378902(+) A-I      3'UTR chr19:54378938(+) A-I      3'UTR chr19:54379013(+) A-I      3'UTR chr19:54379061(+) A-I      3'UTR chr19:54378943(+) A-I      3'UTR chr19:54378950(+) A-I      3'UTR chr19:54378953(+) A-I      3'UTR chr19:54379016(+) A-I      3'UTR chr19:54379024(+) A-I      3'UTR chr19:54379025(+) A-I      3'UTR chr19:54379038(+) A-I      3'UTR chr19:54379045(+) A-I      3'UTR chr19:54379048(+) A-I      3'UTR chr19:54379049(+) A-I      3'UTR chr19:54379053(+) A-I      3'UTR chr19:54374378(+) A-I      intronic chr19:54374442(+) A-I      intronic chr19:54375697(+) A-I      intronic chr19:54375726(+) A-I      intronic chr19:54375854(+) A-I      intronic chr19:54375900(+) A-I      intronic chr19:54376578(+) A-I      intronic chr19:54374251(+) A-I      intronic chr19:54374265(+) A-I      intronic chr19:54374275(+) A-I      intronic chr19:54374343(+) A-I      intronic chr19:54374374(+) A-I      intronic chr19:54375295(+) A-I      intronic chr19:54376002(+) A-I      intronic chr19:54375873(+) A-I      intronic chr19:54375793(+) A-I      intronic chr19:54375878(+) A-I      intronic chr19:54375292(+) A-I      intronic chr19:54376576(+) A-I      intronic chr19:54376587(+) A-I      intronic chr19:54376546(+) A-I      intronic chr19:54375500(+) A-I      intronic chr19:54375579(+) A-I      intronic chr19:54376447(+) A-I      intronic chr19:54375964(+) A-I      intronic chr19:54374437(+) A-I      intronic chr19:54376547(+) A-I      intronic chr19:54376016(+) A-I      intronic chr19:54374391(+) A-I      intronic chr19:54376368(+) A-I      intronic chr19:54374207(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MYADM	chr19:54371138-54371139(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr19:54372689-54372690(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr19:54373085-54373086(+) m6A 5'UTR//intron       24284625//24981863 chr19:54377186-54377187(+) m6A CDS       24284625//24981863 chr19:54377254-54377255(+) m6A CDS       24284625//24981863 chr19:54377323-54377324(+) m6A CDS       24284625//24981863//22575960 chr19:54377453-54377454(+) m6A CDS       24284625//24209618//24981863//26404942//22575960 chr19:54377654-54377655(+) m6A CDS       24284625//24209618//24981863 chr19:54377753-54377754(+) m6A 3'UTR       24284625//24209618//24981863 chr19:54378168-54378169(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr19:54378306-54378307(+) m6A 3'UTR       24209618 chr19:54378866-54378867(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr19:54378903-54378904(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr19:54379001-54379002(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr19:54379007-54379008(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr19:54379083-54379084(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr19:54379093-54379094(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr19:54379129-54379130(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr19:54379146-54379147(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr19:54379172-54379173(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr19:54379310-54379311(+) m6A 3'UTR       24284625//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MYADM	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: MYADM

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg