Detail Information

Basic Information:


  VIRBase ID:  

VHID00098900

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:           SHCBP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H6-3p SHCBP1
miRBase
Accession/Entrez ID		 MIMAT0008404 79801
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - PAL

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SHCBP1
chr16:46614869(-) A-I      3'UTR
chr16:46614864(-) A-I      3'UTR
chr16:46614860(-) A-I      3'UTR
chr16:46614856(-) A-I      3'UTR
chr16:46614865(-) A-I      3'UTR
chr16:46614839(-) A-I      3'UTR
chr16:46614879(-) A-I      3'UTR
chr16:46614880(-) A-I      3'UTR
chr16:46614888(-) A-I      3'UTR
chr16:46630311(-) A-I      intronic
chr16:46642584(-) A-I      intronic
chr16:46630457(-) A-I      intronic
chr16:46630477(-) A-I      intronic
chr16:46630596(-) A-I      intronic
chr16:46630754(-) A-I      intronic
chr16:46630887(-) A-I      intronic
chr16:46642578(-) A-I      intronic
chr16:46642583(-) A-I      intronic
chr16:46630528(-) A-I      intronic
chr16:46630173(-) A-I      intronic
chr16:46642592(-) A-I      intronic
chr16:46642618(-) A-I      intronic
chr16:46642644(-) A-I      intronic
chr16:46630255(-) A-I      intronic
chr16:46630271(-) A-I      intronic
chr16:46630281(-) A-I      intronic
chr16:46630453(-) A-I      intronic
chr16:46649664(-) A-I      intronic
chr16:46630167(-) A-I      intronic
chr16:46630810(-) A-I      intronic
chr16:46643158(-) A-I      intronic
chr16:46631314(-) A-I      intronic
chr16:46643234(-) A-I      intronic
chr16:46614792(-) A-I      3'UTR
chr16:46644032(-) A-I      intronic
chr16:46630493(-) A-I      intronic
chr16:46631266(-) A-I      intronic
chr16:46630161(-) A-I      intronic
chr16:46652596(-) A-I      intronic
chr16:46630708(-) A-I      intronic
chr16:46630603(-) A-I      intronic
chr16:46634295(-) A-I      intronic
chr16:46652692(-) A-I      intronic
chr16:46630318(-) A-I      intronic
chr16:46643595(-) A-I      intronic
chr16:46636618(-) A-I      intronic
chr16:46634326(-) A-I      intronic
chr16:46630226(-) A-I      intronic
chr16:46631292(-) A-I      intronic
chr16:46644744(-) A-I      intronic
chr16:46630707(-) A-I      intronic
chr16:46630619(-) A-I      intronic
chr16:46631287(-) A-I      intronic
chr16:46630297(-) A-I      intronic
chr16:46630804(-) A-I      intronic
chr16:46643988(-) A-I      intronic
chr16:46630811(-) A-I      intronic
chr16:46643233(-) A-I      intronic
chr16:46631199(-) A-I      intronic
chr16:46630602(-) A-I      intronic
chr16:46630252(-) A-I      intronic
chr16:46631212(-) A-I      intronic
chr16:46630912(-) A-I      intronic
chr16:46649569(-) A-I      intronic
chr16:46631277(-) A-I      intronic
chr16:46643225(-) A-I      intronic
chr16:46630780(-) A-I      intronic
chr16:46630736(-) A-I      intronic
chr16:46643965(-) A-I      intronic
chr16:46630310(-) A-I      intronic
chr16:46630287(-) A-I      intronic
chr16:46614782(-) A-I      3'UTR
chr16:46614904(-) A-I      3'UTR
chr16:46614840(-) A-I      3'UTR
chr16:46614752(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SHCBP1
chr16:46643158(-) A-I intron -    22327324
chr16:46630603(-) A-G intron -    22484847
chr16:46630707(-) A-G intron -    22484847
chr16:46630708(-) A-G intron -    22484847
chr16:46630780(-) A-G intron -    22484847
chr16:46630804(-) A-G intron -    22484847
chr16:46630810(-) A-G intron -    22484847
chr16:46630811(-) A-G intron -    22484847
chr16:46631277(-) A-G intron -    22484847
chr16:46631287(-) A-G intron -    22484847
chr16:46643158(-) A-G intron -    22484847
chr16:46649664(-) A-G intron -    22484847
chr16:46629625(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SHCBP1
chr16:46615689-46615690(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:46615754-46615755(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:46615808-46615809(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:46615855-46615856(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:46615942-46615943(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr16:46617433-46617434(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr16:46617476-46617477(-) m6A CDS//exon       27773535//22608085
chr16:46652234-46652235(-) m6A CDS//exon       -
chr16:46654447-46654448(-) m6A exon//intron       24981863
chr16:46654764-46654765(-) m6A exon//intron       24981863
chr16:46654779-46654780(-) m1A exon//intron       26863196//26863410
chr16:46654801-46654802(-) m6A exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SHCBP1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H6-3p
Interactor2: SHCBP1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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