Basic Information:

  VIRBase ID:  

VHID00098893

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          GEMIN7:  NM_001319054     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	GEMIN7
miRBase Accession/Entrez ID	MIMAT0008404	79760
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SIP3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GEMIN7	chr19:45583714(+) A-I      intronic chr19:45583733(+) A-I      intronic chr19:45583791(+) A-I      intronic chr19:45583657(+) A-I      intronic chr19:45584470(+) A-I      intronic chr19:45583786(+) A-I      intronic chr19:45584493(+) A-I      intronic chr19:45583795(+) A-I      intronic chr19:45583846(+) A-I      intronic chr19:45583857(+) A-I      intronic chr19:45588077(+) A-I      intronic chr19:45589055(+) A-I      intronic chr19:45586647(+) A-I      intronic chr19:45586687(+) A-I      intronic chr19:45587268(+) A-I      intronic chr19:45587270(+) A-I      intronic chr19:45587282(+) A-I      intronic chr19:45585981(+) A-I      intronic chr19:45586003(+) A-I      intronic chr19:45586107(+) A-I      intronic chr19:45586139(+) A-I      intronic chr19:45586140(+) A-I      intronic chr19:45586440(+) A-I      intronic chr19:45589243(+) A-I      intronic chr19:45588044(+) A-I      intronic chr19:45587991(+) A-I      intronic chr19:45587977(+) A-I      intronic chr19:45587938(+) A-I      intronic chr19:45587752(+) A-I      intronic chr19:45587540(+) A-I      intronic chr19:45587293(+) A-I      intronic chr19:45586562(+) A-I      intronic chr19:45589336(+) A-I      intronic chr19:45586594(+) A-I      intronic chr19:45586598(+) A-I      intronic chr19:45586637(+) A-I      intronic chr19:45585932(+) A-I      intronic chr19:45589049(+) A-I      intronic chr19:45589044(+) A-I      intronic chr19:45589040(+) A-I      intronic chr19:45589387(+) A-I      intronic chr19:45589308(+) A-I      intronic chr19:45589265(+) A-I      intronic chr19:45589021(+) A-I      intronic chr19:45588094(+) A-I      intronic chr19:45585030(+) A-I      intronic chr19:45585133(+) A-I      intronic chr19:45585951(+) A-I      intronic chr19:45585956(+) A-I      intronic chr19:45585110(+) A-I      intronic chr19:45591958(+) A-I      intronic chr19:45584620(+) A-I      intronic chr19:45584469(+) A-I      intronic chr19:45585014(+) A-I      intronic chr19:45584305(+) A-I      intronic chr19:45586654(+) A-I      intronic chr19:45584554(+) A-I      intronic chr19:45584603(+) A-I      intronic chr19:45583817(+) A-I      intronic chr19:45583734(+) A-I      intronic chr19:45584634(+) A-I      intronic chr19:45591915(+) A-I      intronic chr19:45585093(+) A-I      intronic chr19:45585977(+) A-I      intronic chr19:45587419(+) A-I      intronic chr19:45583842(+) A-I      intronic chr19:45589019(+) A-I      intronic chr19:45583773(+) A-I      intronic chr19:45589029(+) A-I      intronic chr19:45587348(+) A-I      intronic chr19:45586662(+) A-I      intronic chr19:45590532(+) A-I      intronic chr19:45585930(+) A-I      intronic chr19:45588070(+) A-I      intronic chr19:45588351(+) A-I      intronic chr19:45588302(+) A-I      intronic chr19:45587873(+) A-I      intronic chr19:45591930(+) A-I      intronic chr19:45583820(+) A-I      intronic chr19:45589301(+) A-I      intronic chr19:45588140(+) A-I      intronic chr19:45592962(+) A-I      intronic chr19:45587349(+) A-I      intronic chr19:45586884(+) A-I      intronic chr19:45586626(+) A-I      intronic chr19:45589084(+) A-I      intronic chr19:45584529(+) A-I      intronic chr19:45592978(+) A-I      intronic chr19:45592812(+) A-I      intronic chr19:45585124(+) A-I      intronic chr19:45584949(+) A-I      intronic chr19:45584916(+) A-I      intronic chr19:45585081(+) A-I      intronic chr19:45591807(+) A-I      intronic chr19:45585024(+) A-I      intronic chr19:45587213(+) A-I      intronic chr19:45587314(+) A-I      intronic chr19:45587800(+) A-I      intronic chr19:45584359(+) A-I      intronic chr19:45587761(+) A-I      intronic chr19:45588216(+) A-I      intronic chr19:45586079(+) A-I      intronic chr19:45586585(+) A-I      intronic chr19:45589442(+) A-I      intronic chr19:45591607(+) A-I      intronic chr19:45583763(+) A-I      intronic chr19:45587131(+) A-I      intronic chr19:45591920(+) A-I      intronic chr19:45584635(+) A-I      intronic chr19:45585938(+) A-I      intronic chr19:45586449(+) A-I      intronic chr19:45584537(+) A-I      intronic chr19:45587975(+) A-I      intronic chr19:45587310(+) A-I      intronic chr19:45589018(+) A-I      intronic chr19:45583789(+) A-I      intronic chr19:45583858(+) A-I      intronic chr19:45588948(+) A-I      intronic chr19:45590528(+) A-I      intronic chr19:45588292(+) A-I      intronic chr19:45590302(+) A-I      intronic chr19:45589386(+) A-I      intronic chr19:45591785(+) A-I      intronic chr19:45585068(+) A-I      intronic chr19:45587865(+) A-I      intronic chr19:45589066(+) A-I      intronic chr19:45585065(+) A-I      intronic chr19:45590455(+) A-I      intronic chr19:45584985(+) A-I      intronic chr19:45586584(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GEMIN7	chr19:45583842(+) A-I intron -    22327324 chr19:45586435(+) A-I intron -    22327324 chr19:45583698(+) A-G intron -    22484847 chr19:45583771(+) T-C intron -    22484847 chr19:45583773(+) A-G intron -    22484847 chr19:45584481(+) T-C intron -    22484847 chr19:45584529(+) A-G intron -    22484847 chr19:45584537(+) A-G intron -    22484847 chr19:45584539(+) A-G intron -    22484847 chr19:45584635(+) A-G intron -    22484847 chr19:45584916(+) A-G intron -    22484847 chr19:45585014(+) A-G intron -    22484847 chr19:45585124(+) A-G intron -    22484847 chr19:45585963(+) A-G intron -    22484847 chr19:45586079(+) A-G intron -    22484847 chr19:45586081(+) A-G intron -    22484847 chr19:45586435(+) A-G intron -    22484847 chr19:45587285(+) A-G intron -    22484847 chr19:45587314(+) A-G intron -    22484847 chr19:45587761(+) A-G intron -    22484847 chr19:45587873(+) A-G intron -    22484847 chr19:45588070(+) A-G intron -    22484847 chr19:45589018(+) A-G intron -    22484847 chr19:45590455(+) A-G intron -    22484847 chr19:45591785(+) A-G intron -    22484847 chr19:45591915(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GEMIN7	chr19:45582515-45582516(+) m6A 5'UTR       24981863 chr19:45582531-45582532(+) m6A 5'UTR//exon       24981863 chr19:45591806-45591807(+) m6A exon//intron       - chr19:45591940-45591941(+) m6A exon//intron       - chr19:45593369-45593370(+) m6A 5'UTR       - chr19:45593378-45593379(+) m6A CDS       24284625//25456834//22608085 chr19:45593388-45593389(+) m6A CDS       24284625//25456834//22608085 chr19:45593696-45593697(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr19:45593841-45593842(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:45593905-45593906(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:45593914-45593915(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:45593994-45593995(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:45594001-45594002(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:45594039-45594040(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:45594157-45594158(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr19:45594472-45594473(+) m6A 3'UTR       25456834 chr19:45594523-45594524(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GEMIN7	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: GEMIN7

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg