Basic Information:

  VIRBase ID:  

VHID00098768

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          PRDM16:  NM_199454     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	PRDM16
miRBase Accession/Entrez ID	MIMAT0008404	63976
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMD1LL//KMT8F//LVNC8//MEL1//PFM13

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PRDM16	chr1:3217713(+) A-I      intronic chr1:3217621(+) A-I      intronic chr1:3217670(+) A-I      intronic chr1:3323219(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PRDM16	chr1:2985785-2985786(+) m6A 5'UTR//exon       24981863 chr1:3328106-3328107(+) m6A CDS//exon       24981863 chr1:3328169-3328170(+) m6A CDS//exon       24981863 chr1:3328514-3328515(+) m6A CDS//exon       24981863//22608085 chr1:3328537-3328538(+) m6A CDS//exon       24981863//22608085 chr1:3328597-3328598(+) m6A CDS//exon       24981863//22608085 chr1:3328607-3328608(+) m6A CDS//exon       24981863//22608085 chr1:3328631-3328632(+) m6A CDS//exon       24981863//22608085 chr1:3328637-3328638(+) m6A CDS//exon       24981863//22608085 chr1:3328649-3328650(+) m6A CDS//exon       24981863//22608085 chr1:3328667-3328668(+) m6A CDS//exon       24981863//22608085 chr1:3328739-3328740(+) m6A CDS//exon       24981863//22608085 chr1:3328832-3328833(+) m6A CDS//exon       24981863//22608085 chr1:3328985-3328986(+) m6A CDS//exon       24981863 chr1:3342761-3342762(+) m6A CDS//exon       24981863 chr1:3342778-3342779(+) m6A CDS//exon       24981863 chr1:3347440-3347441(+) m6A CDS//exon       24981863 chr1:3347545-3347546(+) m6A CDS//exon       24981863 chr1:3350453-3350454(+) m6A 3'UTR//exon       25456834 chr1:3350528-3350529(+) m6A 3'UTR//exon       25456834//22608085 chr1:3350594-3350595(+) m6A 3'UTR//exon       25456834//22608085 chr1:3350633-3350634(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr1:3350691-3350692(+) m6A 3'UTR       25456834//24981863//22608085 chr1:3350749-3350750(+) m6A 3'UTR       25456834//24981863//22608085 chr1:3350869-3350870(+) m6A 3'UTR       22608085 chr1:3351592-3351593(+) m6A 3'UTR       25456834//24981863 chr1:3351605-3351606(+) m6A 3'UTR       25456834//24981863 chr1:3351624-3351625(+) m6A 3'UTR       25456834//24981863 chr1:3351644-3351645(+) m6A 3'UTR       25456834//24981863 chr1:3352315-3352316(+) m6A 3'UTR       22608085 chr1:3352322-3352323(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PRDM16	Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: PRDM16

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg