Basic Information:

  VIRBase ID:  

VHID00098736

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          PCTP:  NM_001330377     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	PCTP
miRBase Accession/Entrez ID	MIMAT0008404	58488
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PC-TP//STARD2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PCTP	chr17:53845031(+) A-I      intronic chr17:53844967(+) A-I      intronic chr17:53845331(+) A-I      intronic chr17:53844900(+) A-I      intronic chr17:53849693(+) A-I      intronic chr17:53848355(+) A-I      intronic chr17:53848296(+) A-I      intronic chr17:53846030(+) A-I      intronic chr17:53847450(+) A-I      intronic chr17:53845916(+) A-I      intronic chr17:53848356(+) A-I      intronic chr17:53845381(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PCTP	chr17:53828453-53828454(+) m6A 5'UTR       24981863 chr17:53828569-53828570(+) m6A 5'UTR//CDS       24981863 chr17:53828600-53828601(+) m6A 5'UTR//CDS       - chr17:53851109-53851110(+) m6A 3'UTR//CDS//exon       - chr17:53851115-53851116(+) m6A 3'UTR//CDS//exon       - chr17:53852822-53852823(+) m6A 3'UTR//intron       24981863//22608085 chr17:53853420-53853421(+) m6A 3'UTR//CDS//exon//intron       24981863 chr17:53853441-53853442(+) m6A 3'UTR//CDS//exon//intron       - chr17:53853455-53853456(+) m6A 3'UTR//CDS//exon//intron       - chr17:53853469-53853470(+) m6A 3'UTR//exon//intron       - chr17:53853476-53853477(+) m6A 3'UTR//exon//intron       - chr17:53853742-53853743(+) m6A 3'UTR//exon//intron       - chr17:53853751-53853752(+) m6A 3'UTR//exon//intron       - chr17:53853795-53853796(+) m6A 3'UTR//exon//intron       - chr17:53853843-53853844(+) m6A 3'UTR//exon//intron       24981863 chr17:53854098-53854099(+) m6A 3'UTR//exon//intron       24981863 chr17:53854130-53854131(+) m6A 3'UTR//exon//intron       24981863 chr17:53854483-53854484(+) m6A 3'UTR//exon//intron       24981863//22608085 chr17:53854600-53854601(+) m6A 3'UTR//exon//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PCTP	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: PCTP

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg