Basic Information:

  VIRBase ID:  

VHID00098631

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          PBXIP1:  NM_020524     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	PBXIP1
miRBase Accession/Entrez ID	MIMAT0008404	57326
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HPIP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PBXIP1	chr1:154926888(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PBXIP1	chr1:154916630-154916631(-) m6A 3'UTR       27773535 chr1:154917064-154917065(-) m6A 3'UTR       - chr1:154917318-154917319(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085 chr1:154917423-154917424(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr1:154917578-154917579(-) m6A CDS       24209618//24981863//27773535//27371828//27773536 chr1:154918065-154918066(-) m6A CDS       24209618//27773535//27371828//27773536 chr1:154918092-154918093(-) m6A CDS       24209618//27773535//27371828//27773536 chr1:154918126-154918127(-) m6A CDS       27773535//27371828 chr1:154918155-154918156(-) m6A CDS       27773535//27371828 chr1:154918288-154918289(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536 chr1:154918452-154918453(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085 chr1:154918459-154918460(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085 chr1:154918529-154918530(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr1:154918620-154918621(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr1:154918638-154918639(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr1:154918642-154918643(-) m1A CDS       26863196 chr1:154918672-154918673(-) Am CDS       - chr1:154918676-154918677(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr1:154918698-154918699(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr1:154918803-154918804(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr1:154918815-154918816(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536 chr1:154918832-154918833(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536 chr1:154918881-154918882(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536 chr1:154918994-154918995(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536 chr1:154919018-154919019(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536 chr1:154919605-154919606(-) m6A 3'UTR//intron       24209618//27371828//27773536 chr1:154919676-154919677(-) m6A 3'UTR//intron       27371828//27773536 chr1:154919920-154919921(-) m6A CDS//exon       24209618 chr1:154919926-154919927(-) m6A CDS//exon       24209618 chr1:154919944-154919945(-) m6A CDS//exon       24209618//27773536 chr1:154919962-154919963(-) m6A CDS//exon       24209618//27773536 chr1:154920009-154920010(-) m6A CDS//exon       24284625//24209618//27773536 chr1:154920124-154920125(-) m6A CDS//exon       24284625//24209618//27773536 chr1:154920151-154920152(-) m6A 3'UTR//CDS//exon       24209618//27773536 chr1:154920460-154920461(-) m6A 3'UTR//CDS//exon       24209618//27773536 chr1:154920712-154920713(-) m6A 3'UTR//CDS//exon       24209618//27371828//27773536 chr1:154920787-154920788(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773535//27371828//27773536 chr1:154923757-154923758(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536 chr1:154923766-154923767(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536 chr1:154923771-154923772(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536 chr1:154923794-154923795(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536 chr1:154923805-154923806(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536 chr1:154923823-154923824(-) m6A CDS//exon       24284625//24209618//27773535//27371828//27773536 chr1:154923957-154923958(-) m6A CDS//exon       24284625//24209618//27773535 chr1:154923996-154923997(-) m6A CDS//exon       24284625//27773535 chr1:154924076-154924077(-) m6A exon//intron       27773535 chr1:154924143-154924144(-) m6A exon//intron       27773535 chr1:154924285-154924286(-) m6A CDS//exon//intron       24284625//27773535//27371828 chr1:154924309-154924310(-) m6A CDS//exon//intron       24284625//27773535//27371828 chr1:154924356-154924357(-) m6A CDS//exon//intron       24284625//24981863//27773535//27371828 chr1:154924381-154924382(-) m6A 5'UTR//CDS//exon//intron       24284625//24981863//27773535//27371828 chr1:154926180-154926181(-) m6A CDS//exon//intron       24284625//24981863//27371828 chr1:154926208-154926209(-) m6A 5'UTR//exon//intron       24284625//24981863//26404942//27371828 chr1:154928565-154928566(-) m6A 5'UTR       24284625//24981863//26404942//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PBXIP1	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: PBXIP1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg