Basic Information:

  VIRBase ID:  

VHID00098626

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          VANGL2:  NM_020335     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	VANGL2
miRBase Accession/Entrez ID	MIMAT0008404	57216
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LPP1//LTAP//STB1//STBM//STBM1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VANGL2	chr1:160375909(+) A-I      intronic chr1:160382045(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VANGL2	chr1:160385943-160385944(+) m6A CDS       24209618 chr1:160388879-160388880(+) m6A CDS       24209618//25456834//24981863 chr1:160388888-160388889(+) m6A CDS       24209618//25456834//24981863 chr1:160388903-160388904(+) m6A CDS       24209618//25456834//24981863 chr1:160390907-160390908(+) m6A CDS//exon       24209618 chr1:160393906-160393907(+) m6A CDS//exon       24209618//24981863 chr1:160393924-160393925(+) m6A CDS//exon       24209618//24981863 chr1:160393989-160393990(+) m6A CDS       24209618 chr1:160394936-160394937(+) m6A CDS       24209618//25456834//24981863//22608085 chr1:160394975-160394976(+) m6A CDS       24209618//25456834//24981863//22608085 chr1:160394982-160394983(+) m6A CDS       24209618//25456834//24981863//22608085 chr1:160395052-160395053(+) m6A CDS       24209618//25456834//24981863//22608085 chr1:160395095-160395096(+) m6A CDS       24209618//25456834//24981863//22608085 chr1:160395156-160395157(+) m6A CDS       24209618//25456834//24981863//22608085 chr1:160395194-160395195(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr1:160395346-160395347(+) m6A 3'UTR       24209618 chr1:160395356-160395357(+) m6A 3'UTR       24209618 chr1:160395387-160395388(+) m6A 3'UTR       24209618 chr1:160395562-160395563(+) m6A 3'UTR       24209618 chr1:160395607-160395608(+) m6A 3'UTR       24209618 chr1:160396364-160396365(+) Y 3'UTR       26075521 chr1:160397802-160397803(+) m6A 3'UTR       24209618//24981863 chr1:160397929-160397930(+) m6A 3'UTR       24209618 chr1:160397957-160397958(+) m6A 3'UTR       24209618 chr1:160397964-160397965(+) m6A 3'UTR       24209618 chr1:160397974-160397975(+) m6A 3'UTR       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VANGL2	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: VANGL2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg