Basic Information:

  VIRBase ID:  

VHID00098570

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          TRIM39:  NM_021253     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	TRIM39
miRBase Accession/Entrez ID	MIMAT0008404	56658
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RNF23//TFP//TRIM39B

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRIM39	chr6:30305071(+) A-I      intronic chr6:30303244(+) A-I      intronic chr6:30303343(+) A-I      intronic chr6:30307055(+) A-I      intronic chr6:30303140(+) A-I      intronic chr6:30302586(+) A-I      intronic chr6:30302640(+) A-I      intronic chr6:30304994(+) A-I      intronic chr6:30307200(+) A-I      intronic chr6:30298925(+) A-I      intronic chr6:30306948(+) A-I      intronic chr6:30305224(+) A-I      intronic chr6:30306982(+) A-I      intronic chr6:30305208(+) A-I      intronic chr6:30303128(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRIM39	chr6:30294369-30294370(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr6:30294374-30294375(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr6:30294594-30294595(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536 chr6:30294756-30294757(+) m6A 5'UTR//intron       27773536 chr6:30295092-30295093(+) m6A 5'UTR//intron       25456834//24981863//27773536//22608085 chr6:30295194-30295195(+) m6A 5'UTR//intron       25456834//24981863//22608085 chr6:30295206-30295207(+) m6A 5'UTR//intron       25456834//22608085 chr6:30295237-30295238(+) m6A 5'UTR//intron       25456834//24981863//22608085 chr6:30295244-30295245(+) m6A 5'UTR//intron       25456834//24981863//22608085 chr6:30295256-30295257(+) m6A 5'UTR//intron       25456834//24981863//22608085 chr6:30295296-30295297(+) m6A 5'UTR//intron       25456834//22608085 chr6:30295322-30295323(+) m6A 5'UTR//intron       25456834//22608085 chr6:30297103-30297104(+) m6A CDS       - chr6:30297158-30297159(+) m6A CDS       - chr6:30297207-30297208(+) m6A CDS       24284625 chr6:30297269-30297270(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr6:30297281-30297282(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr6:30297307-30297308(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:30298562-30298563(+) m6A CDS       - chr6:30298589-30298590(+) m6A CDS       - chr6:30303523-30303524(+) m6A CDS       - chr6:30303628-30303629(+) m6A CDS       24981863 chr6:30303633-30303634(+) m6A CDS       24981863 chr6:30303675-30303676(+) m6A CDS       24981863 chr6:30309568-30309569(+) m6A CDS       24284625 chr6:30309573-30309574(+) m6A CDS       24284625 chr6:30309685-30309686(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:30309713-30309714(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:30309754-30309755(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:30309788-30309789(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:30309840-30309841(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:30309866-30309867(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:30309905-30309906(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr6:30309948-30309949(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:30310156-30310157(+) m6A 3'UTR       25456834 chr6:30310200-30310201(+) m6A 3'UTR       - chr6:30310736-30310737(+) m6A 3'UTR       27773535 chr6:30311397-30311398(+) m6A 3'UTR       24981863//22608085 chr6:30311408-30311409(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRIM39	Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: TRIM39

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg