Detail Information

Basic Information:


  VIRBase ID:  

VHID00098530

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:           RCC2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H6-3p RCC2
miRBase
Accession/Entrez ID		 MIMAT0008404 55920
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - TD-60

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RCC2
chr1:17741421(-) A-I      intronic
chr1:17742306(-) A-I      intronic
chr1:17740769(-) A-I      intronic
chr1:17741423(-) A-I      intronic
chr1:17741325(-) A-I      intronic
chr1:17740979(-) A-I      intronic
chr1:17757783(-) A-I      intronic
chr1:17757099(-) A-I      intronic
chr1:17741304(-) A-I      intronic
chr1:17740902(-) A-I      intronic
chr1:17757119(-) A-I      intronic
chr1:17741217(-) A-I      intronic
chr1:17757135(-) A-I      intronic
chr1:17757090(-) A-I      intronic
chr1:17757321(-) A-I      intronic
chr1:17740455(-) A-I      intronic
chr1:17742478(-) A-I      intronic
chr1:17744141(-) A-I      intronic
chr1:17740405(-) A-I      intronic
chr1:17740362(-) A-I      intronic
chr1:17757465(-) A-I      intronic
chr1:17741291(-) A-I      intronic
chr1:17757773(-) A-I      intronic
chr1:17740896(-) A-I      intronic
chr1:17744987(-) A-I      intronic
chr1:17757441(-) A-I      intronic
chr1:17757413(-) A-I      intronic
chr1:17742399(-) A-I      intronic
chr1:17757335(-) A-I      intronic
chr1:17745144(-) A-I      intronic
chr1:17742482(-) A-I      intronic
chr1:17742308(-) A-I      intronic
chr1:17741233(-) A-I      intronic
chr1:17741225(-) A-I      intronic
chr1:17757415(-) A-I      intronic
chr1:17742292(-) A-I      intronic
chr1:17757393(-) A-I      intronic
chr1:17741388(-) A-I      intronic
chr1:17757377(-) A-I      intronic
chr1:17741389(-) A-I      intronic
chr1:17741220(-) A-I      intronic
chr1:17741170(-) A-I      intronic
chr1:17740859(-) A-I      intronic
chr1:17742393(-) A-I      intronic
chr1:17741256(-) A-I      intronic
chr1:17757136(-) A-I      intronic
chr1:17741200(-) A-I      intronic
chr1:17757362(-) A-I      intronic
chr1:17741271(-) A-I      intronic
chr1:17757232(-) A-I      intronic
chr1:17741260(-) A-I      intronic
chr1:17757189(-) A-I      intronic
chr1:17741317(-) A-I      intronic
chr1:17741249(-) A-I      intronic
chr1:17742044(-) A-I      intronic
chr1:17757531(-) A-I      intronic
chr1:17741294(-) A-I      intronic
chr1:17744170(-) A-I      intronic
chr1:17745148(-) A-I      intronic
chr1:17758448(-) A-I      intronic
chr1:17741358(-) A-I      intronic
chr1:17741337(-) A-I      intronic
chr1:17741163(-) A-I      intronic
chr1:17740878(-) A-I      intronic
chr1:17741273(-) A-I      intronic
chr1:17757363(-) A-I      intronic
chr1:17740950(-) A-I      intronic
chr1:17742503(-) A-I      intronic
chr1:17741297(-) A-I      intronic
chr1:17757097(-) A-I      intronic
chr1:17740914(-) A-I      intronic
chr1:17741311(-) A-I      intronic
chr1:17741295(-) A-I      intronic
chr1:17757639(-) A-I      intronic
chr1:17741308(-) A-I      intronic
chr1:17742479(-) A-I      intronic
chr1:17741266(-) A-I      intronic
chr1:17740862(-) A-I      intronic
chr1:17741243(-) A-I      intronic
chr1:17740370(-) A-I      intronic
chr1:17757437(-) A-I      intronic
chr1:17757417(-) A-I      intronic
chr1:17742489(-) A-I      intronic
chr1:17757353(-) A-I      intronic
chr1:17742281(-) A-I      intronic
chr1:17741239(-) A-I      intronic
chr1:17740943(-) A-I      intronic
chr1:17741348(-) A-I      intronic
chr1:17757227(-) A-I      intronic
chr1:17741303(-) A-I      intronic
chr1:17741405(-) A-I      intronic
chr1:17741385(-) A-I      intronic
chr1:17741296(-) A-I      intronic
chr1:17757336(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RCC2
chr1:17741220(-) A-I intron -    22327324
chr1:17741385(-) A-I intron -    22327324
chr1:17742292(-) A-I intron -    21960545
chr1:17740370(-) A-I intron -    21960545
chr1:17741297(-) A-I intron -    21960545
chr1:17741421(-) A-I intron -    21960545
chr1:17741422(-) A-I intron -    21960545
chr1:17741423(-) A-I intron -    21960545
chr1:17738009(-) T-C intron -    22484847
chr1:17740370(-) A-G intron -    22484847
chr1:17740859(-) A-G intron -    22484847
chr1:17740862(-) A-G intron -    22484847
chr1:17740896(-) A-G intron -    22484847
chr1:17740943(-) A-G intron -    22484847
chr1:17740950(-) A-G intron -    22484847
chr1:17741170(-) A-G intron -    22484847
chr1:17741220(-) A-G intron -    22484847
chr1:17741225(-) A-G intron -    22484847
chr1:17741243(-) A-G intron -    22484847
chr1:17741260(-) A-G intron -    22484847
chr1:17741266(-) A-G intron -    22484847
chr1:17741271(-) A-G intron -    22484847
chr1:17741294(-) A-G intron -    22484847
chr1:17741296(-) A-G intron -    22484847
chr1:17741297(-) A-G intron -    22484847
chr1:17741303(-) A-G intron -    22484847
chr1:17741311(-) A-G intron -    22484847
chr1:17741337(-) A-G intron -    22484847
chr1:17741381(-) G-C intron -    22484847
chr1:17741385(-) A-G intron -    22484847
chr1:17741388(-) A-G intron -    22484847
chr1:17741389(-) A-G intron -    22484847
chr1:17741405(-) A-G intron -    22484847
chr1:17742210(-) T-G intron -    22484847
chr1:17742211(-) T-G intron -    22484847
chr1:17742393(-) A-G intron -    22484847
chr1:17742479(-) A-G intron -    22484847
chr1:17742482(-) A-G intron -    22484847
chr1:17742489(-) A-G intron -    22484847
chr1:17742503(-) A-G intron -    22484847
chr1:17753435(-) T-A intron -    22484847
chr1:17753525(-) C-T intron -    22484847
chr1:17757189(-) A-G intron -    22484847
chr1:17757227(-) A-G intron -    22484847
chr1:17757335(-) A-G intron -    22484847
chr1:17757336(-) A-G intron -    22484847
chr1:17757362(-) A-G intron -    22484847
chr1:17757377(-) A-G intron -    22484847
chr1:17757413(-) A-G intron -    22484847
chr1:17757415(-) A-G intron -    22484847
chr1:17757417(-) A-G intron -    22484847
chr1:17757437(-) A-G intron -    22484847
chr1:17757441(-) A-G intron -    22484847
chr1:17757639(-) A-G intron -    22484847
chr1:17762307(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RCC2
chr1:17733275-17733276(-) m6A 3'UTR       27773535
chr1:17733288-17733289(-) m6A 3'UTR       27773535
chr1:17733531-17733532(-) m6A 3'UTR       22575960
chr1:17733602-17733603(-) m6A 3'UTR       24284625//25456834//24981863//22575960
chr1:17733617-17733618(-) m6A 3'UTR       24284625//25456834//24981863//22575960
chr1:17733634-17733635(-) m6A 3'UTR       24284625//25456834//24981863//22575960
chr1:17733648-17733649(-) m6A 3'UTR       24284625//25456834//24981863//22575960
chr1:17733699-17733700(-) m6A 3'UTR       24284625//24981863//22575960
chr1:17733844-17733845(-) m6A 3'UTR       24284625//22575960
chr1:17734256-17734257(-) m6A 3'UTR       24209618//24981863
chr1:17734269-17734270(-) m6A 3'UTR       24209618//24981863
chr1:17734275-17734276(-) m6A 3'UTR       24209618//24981863
chr1:17734334-17734335(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr1:17734387-17734388(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr1:17734404-17734405(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr1:17734604-17734605(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:17734746-17734747(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:17734832-17734833(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:17734857-17734858(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:17734866-17734867(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:17735244-17735245(-) m6A 3'UTR//intron       24981863
chr1:17735458-17735459(-) m6A 3'UTR//intron       24284625//24981863//27371828//22575960//22608085
chr1:17735573-17735574(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22575960//22608085
chr1:17735593-17735594(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr1:17735615-17735616(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr1:17735638-17735639(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr1:17736495-17736496(-) m6A CDS       24284625//27773535//27371828//22575960
chr1:17736536-17736537(-) m6A CDS       24284625//22575960
chr1:17738620-17738621(-) m6A CDS       24284625//22575960
chr1:17739604-17739605(-) m6A CDS       24284625//22575960
chr1:17748724-17748725(-) m6A CDS       22575960
chr1:17748756-17748757(-) m6A CDS       22575960
chr1:17749220-17749221(-) m6A CDS       22575960
chr1:17749273-17749274(-) m6A CDS       24284625//22575960
chr1:17749306-17749307(-) m6A CDS       24284625//22575960
chr1:17752105-17752106(-) m6A CDS       24284625//24209618//22575960
chr1:17755608-17755609(-) m6A CDS       24284625//24209618//22575960
chr1:17755636-17755637(-) m6A CDS       24284625//24209618//27773535//22575960
chr1:17755692-17755693(-) m6A CDS       24209618//27773536//22575960
chr1:17764749-17764750(-) m6A CDS       24209618//27773536//22575960
chr1:17764997-17764998(-) m1A CDS       26863410//26863196

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RCC2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H6-3p
Interactor2: RCC2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//Targetscan
Support Database RepTar//VmiReg

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