Basic Information:

  VIRBase ID:  

VHID00098496

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          IPO9:  NM_018085     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	IPO9
miRBase Accession/Entrez ID	MIMAT0008404	55705
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Imp9

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	IPO9	chr1:201851298(+) A-I      3'UTR chr1:201846790(+) A-I      3'UTR chr1:201812850(+) A-I      intronic chr1:201812877(+) A-I      intronic chr1:201815185(+) A-I      intronic chr1:201815617(+) A-I      intronic chr1:201815872(+) A-I      intronic chr1:201835436(+) A-I      intronic chr1:201840701(+) A-I      intronic chr1:201841085(+) A-I      intronic chr1:201841135(+) A-I      intronic chr1:201841138(+) A-I      intronic chr1:201841175(+) A-I      intronic chr1:201835450(+) A-I      intronic chr1:201800243(+) A-I      intronic chr1:201801634(+) A-I      intronic chr1:201801639(+) A-I      intronic chr1:201805528(+) A-I      intronic chr1:201805588(+) A-I      intronic chr1:201808173(+) A-I      intronic chr1:201808177(+) A-I      intronic chr1:201841121(+) A-I      intronic chr1:201841333(+) A-I      intronic chr1:201844463(+) A-I      intronic chr1:201815156(+) A-I      intronic chr1:201812868(+) A-I      intronic chr1:201805190(+) A-I      intronic chr1:201840648(+) A-I      intronic chr1:201815139(+) A-I      intronic chr1:201846483(+) A-I      3'UTR chr1:201840756(+) A-I      intronic chr1:201840718(+) A-I      intronic chr1:201805181(+) A-I      intronic chr1:201835421(+) A-I      intronic chr1:201809357(+) A-I      intronic chr1:201812836(+) A-I      intronic chr1:201805643(+) A-I      intronic chr1:201826050(+) A-I      intronic chr1:201844462(+) A-I      intronic chr1:201808369(+) A-I      intronic chr1:201846842(+) A-I      3'UTR chr1:201830278(+) A-I      intronic chr1:201807034(+) A-I      intronic chr1:201841101(+) A-I      intronic chr1:201840638(+) A-I      intronic chr1:201842341(+) A-I      intronic chr1:201851413(+) A-I      3'UTR chr1:201805593(+) A-I      intronic chr1:201842505(+) A-I      intronic chr1:201808578(+) A-I      intronic chr1:201815115(+) A-I      intronic chr1:201835402(+) A-I      intronic chr1:201841186(+) A-I      intronic chr1:201816007(+) A-I      intronic chr1:201846931(+) A-I      3'UTR chr1:201841264(+) A-I      intronic chr1:201851449(+) A-I      3'UTR chr1:201805529(+) A-I      intronic chr1:201835437(+) A-I      intronic chr1:201808568(+) A-I      intronic chr1:201808414(+) A-I      intronic chr1:201842494(+) A-I      intronic chr1:201835395(+) A-I      intronic chr1:201809409(+) A-I      intronic chr1:201840768(+) A-I      intronic chr1:201815625(+) A-I      intronic chr1:201840704(+) A-I      intronic chr1:201841176(+) A-I      intronic chr1:201841678(+) A-I      intronic chr1:201808575(+) A-I      intronic chr1:201844469(+) A-I      intronic chr1:201841611(+) A-I      intronic chr1:201840618(+) A-I      intronic chr1:201842359(+) A-I      intronic chr1:201815594(+) A-I      intronic chr1:201840608(+) A-I      intronic chr1:201846453(+) A-I      3'UTR chr1:201840653(+) A-I      intronic chr1:201805583(+) A-I      intronic chr1:201815161(+) A-I      intronic chr1:201846365(+) A-I      3'UTR chr1:201840795(+) A-I      intronic chr1:201846419(+) A-I      3'UTR chr1:201846835(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	IPO9	chr1:201846483(+) A-I intron -    21960545 chr1:201846835(+) A-I intron -    21960545 chr1:201845882(+) G-A intron -    21725310 chr1:201805583(+) A-G intron -    22484847 chr1:201805593(+) A-G intron -    22484847 chr1:201807203(+) G-A intron -    22484847 chr1:201815139(+) A-G intron -    22484847 chr1:201815594(+) A-G intron -    22484847 chr1:201815625(+) A-G intron -    22484847 chr1:201816007(+) A-G intron -    22484847 chr1:201831693(+) T-G intron -    22484847 chr1:201835437(+) A-G intron -    22484847 chr1:201838280(+) G-A intron -    22484847 chr1:201840608(+) A-G intron -    22484847 chr1:201840648(+) A-G intron -    22484847 chr1:201840653(+) A-G intron -    22484847 chr1:201840718(+) A-G intron -    22484847 chr1:201840756(+) A-G intron -    22484847 chr1:201840768(+) A-G intron -    22484847 chr1:201840795(+) A-G intron -    22484847 chr1:201841101(+) A-G intron -    22484847 chr1:201841121(+) A-G intron -    22484847 chr1:201841264(+) A-G intron -    22484847 chr1:201841333(+) A-G intron -    22484847 chr1:201846419(+) A-G intron -    22484847 chr1:201846976(+) T-C intron -    22484847 chr1:201848991(+) A-C intron -    22484847 chr1:201851449(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	IPO9	chr1:201798471-201798472(+) m6A CDS//exon       24284625//24209618//22575960 chr1:201827638-201827639(+) Y CDS       26075521 chr1:201839907-201839908(+) m6A CDS       24284625 chr1:201839924-201839925(+) m6A CDS       24284625 chr1:201843983-201843984(+) m6A CDS       24981863 chr1:201845167-201845168(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:201845226-201845227(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201845333-201845334(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:201845370-201845371(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:201845377-201845378(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:201845401-201845402(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:201845417-201845418(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:201845482-201845483(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:201845569-201845570(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201845592-201845593(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201845650-201845651(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201845679-201845680(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201845852-201845853(+) m6A 3'UTR       24981863 chr1:201846551-201846552(+) m6A 3'UTR       24981863 chr1:201846576-201846577(+) m6A 3'UTR       24981863 chr1:201846608-201846609(+) m6A 3'UTR       24981863 chr1:201846852-201846853(+) m6A 3'UTR       22608085 chr1:201846875-201846876(+) m6A 3'UTR       24284625//22608085 chr1:201846955-201846956(+) m6A 3'UTR       24284625//24981863//22608085 chr1:201846972-201846973(+) m6A 3'UTR       24284625//24981863//22608085 chr1:201847045-201847046(+) m6A 3'UTR       24284625//24981863//22608085 chr1:201847367-201847368(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:201847386-201847387(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:201847497-201847498(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201847536-201847537(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201847575-201847576(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201847659-201847660(+) m6A 3'UTR       24209618//24981863//22608085 chr1:201847682-201847683(+) m6A 3'UTR       22608085 chr1:201847773-201847774(+) m6A 3'UTR       - chr1:201847900-201847901(+) m6A 3'UTR       24284625//25456834//22608085 chr1:201847962-201847963(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:201847969-201847970(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:201848003-201848004(+) m6A 3'UTR       24284625//24981863//22608085 chr1:201848047-201848048(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:201848067-201848068(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:201848110-201848111(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:201848134-201848135(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201848191-201848192(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:201848222-201848223(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:201848304-201848305(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:201848358-201848359(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201848371-201848372(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:201848393-201848394(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr1:201848442-201848443(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr1:201848463-201848464(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr1:201848501-201848502(+) m6A 3'UTR       24284625//24209618//22575960//22608085 chr1:201852413-201852414(+) m6A 3'UTR       24981863 chr1:201852437-201852438(+) m6A 3'UTR       24981863 chr1:201852514-201852515(+) m6A 3'UTR       24981863//22608085 chr1:201852547-201852548(+) m6A 3'UTR       24981863//22608085 chr1:201852588-201852589(+) m6A 3'UTR       22608085 chr1:201852683-201852684(+) m6A 3'UTR       22608085 chr1:201852728-201852729(+) m6A 3'UTR       24981863//22608085 chr1:201852738-201852739(+) m6A 3'UTR       24981863//22608085 chr1:201852782-201852783(+) m6A 3'UTR       24981863//22608085 chr1:201852790-201852791(+) m6A 3'UTR       24981863//22608085 chr1:201852816-201852817(+) m6A 3'UTR       24284625//24981863//22608085 chr1:201852836-201852837(+) m6A 3'UTR       24284625//24981863//22608085 chr1:201852855-201852856(+) m6A 3'UTR       24284625//24981863//22608085 chr1:201853157-201853158(+) m6A 3'UTR       24981863 chr1:201853191-201853192(+) m6A 3'UTR       24981863 chr1:201853212-201853213(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	IPO9	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: IPO9

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg