Basic Information:

  VIRBase ID:  

VHID00098358

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          FNBP1L:  NM_001024948     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	FNBP1L
miRBase Accession/Entrez ID	MIMAT0008404	54874
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf39//TOCA1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FNBP1L	chr1:93947567(+) A-I      intronic chr1:93947583(+) A-I      intronic chr1:93947558(+) A-I      intronic chr1:93968736(+) A-I      intronic chr1:93982735(+) A-I      intronic chr1:93925192(+) A-I      intronic chr1:93970002(+) A-I      intronic chr1:93932518(+) A-I      intronic chr1:94018531(+) A-I      3'UTR chr1:93947566(+) A-I      intronic chr1:93958227(+) A-I      intronic chr1:93958226(+) A-I      intronic chr1:93925204(+) A-I      intronic chr1:93968720(+) A-I      intronic chr1:93958223(+) A-I      intronic chr1:93968729(+) A-I      intronic chr1:93947626(+) A-I      intronic chr1:93958166(+) A-I      intronic chr1:93968731(+) A-I      intronic chr1:93958173(+) A-I      intronic chr1:93947570(+) A-I      intronic chr1:93970000(+) A-I      intronic chr1:93925188(+) A-I      intronic chr1:93925214(+) A-I      intronic chr1:93925210(+) A-I      intronic chr1:93925216(+) A-I      intronic chr1:93925209(+) A-I      intronic chr1:93925201(+) A-I      intronic chr1:93947559(+) A-I      intronic chr1:93947580(+) A-I      intronic chr1:93947574(+) A-I      intronic chr1:93922578(+) A-I      intronic chr1:93922482(+) A-I      intronic chr1:93922230(+) A-I      intronic chr1:93922226(+) A-I      intronic chr1:93922216(+) A-I      intronic chr1:93921011(+) A-I      intronic chr1:93922122(+) A-I      intronic chr1:93922123(+) A-I      intronic chr1:94007797(+) A-I      intronic chr1:93985420(+) A-I      intronic chr1:93982800(+) A-I      intronic chr1:93982766(+) A-I      intronic chr1:93982204(+) A-I      intronic chr1:93973347(+) A-I      intronic chr1:93963439(+) A-I      intronic chr1:93962656(+) A-I      intronic chr1:93962646(+) A-I      intronic chr1:93958740(+) A-I      intronic chr1:93951309(+) A-I      intronic chr1:93950729(+) A-I      intronic chr1:93950642(+) A-I      intronic chr1:93950633(+) A-I      intronic chr1:93950628(+) A-I      intronic chr1:93950571(+) A-I      intronic chr1:93950532(+) A-I      intronic chr1:93950531(+) A-I      intronic chr1:93950460(+) A-I      intronic chr1:93950459(+) A-I      intronic chr1:93950456(+) A-I      intronic chr1:93950455(+) A-I      intronic chr1:93948468(+) A-I      intronic chr1:93948464(+) A-I      intronic chr1:93948454(+) A-I      intronic chr1:93948188(+) A-I      intronic chr1:93947644(+) A-I      intronic chr1:93938208(+) A-I      intronic chr1:93938186(+) A-I      intronic chr1:93938184(+) A-I      intronic chr1:93937128(+) A-I      intronic chr1:93937095(+) A-I      intronic chr1:93937058(+) A-I      intronic chr1:93935905(+) A-I      intronic chr1:93935874(+) A-I      intronic chr1:93933190(+) A-I      intronic chr1:93924705(+) A-I      intronic chr1:93924641(+) A-I      intronic chr1:93923939(+) A-I      intronic chr1:93922628(+) A-I      intronic chr1:93922676(+) A-I      intronic chr1:93937102(+) A-I      intronic chr1:93938258(+) A-I      intronic chr1:93982216(+) A-I      intronic chr1:93922634(+) A-I      intronic chr1:93958147(+) A-I      intronic chr1:93985251(+) A-I      intronic chr1:93920929(+) A-I      intronic chr1:93936168(+) A-I      intronic chr1:93924685(+) A-I      intronic chr1:93921576(+) A-I      intronic chr1:93958265(+) A-I      intronic chr1:93986478(+) A-I      intronic chr1:93938114(+) A-I      intronic chr1:93963411(+) A-I      intronic chr1:93982984(+) A-I      intronic chr1:93962350(+) A-I      intronic chr1:93982109(+) A-I      intronic chr1:93963438(+) A-I      intronic chr1:93920883(+) A-I      intronic chr1:94007734(+) A-I      intronic chr1:93924576(+) A-I      intronic chr1:94007713(+) A-I      intronic chr1:93982767(+) A-I      intronic chr1:93950604(+) A-I      intronic chr1:93917374(+) A-I      intronic chr1:93924701(+) A-I      intronic chr1:93985245(+) A-I      intronic chr1:93935894(+) A-I      intronic chr1:93921592(+) A-I      intronic chr1:93949534(+) A-I      intronic chr1:93958635(+) A-I      intronic chr1:93923870(+) A-I      intronic chr1:94008572(+) A-I      intronic chr1:93958222(+) A-I      intronic chr1:93950561(+) A-I      intronic chr1:94008524(+) A-I      intronic chr1:93924682(+) A-I      intronic chr1:93949511(+) A-I      intronic chr1:93922136(+) A-I      intronic chr1:93940942(+) A-I      intronic chr1:94007758(+) A-I      intronic chr1:93985393(+) A-I      intronic chr1:94007753(+) A-I      intronic chr1:93924757(+) A-I      intronic chr1:93920566(+) A-I      intronic chr1:93958644(+) A-I      intronic chr1:93973249(+) A-I      intronic chr1:93941071(+) A-I      intronic chr1:93973227(+) A-I      intronic chr1:93951466(+) A-I      intronic chr1:94008482(+) A-I      intronic chr1:93958172(+) A-I      intronic chr1:93950528(+) A-I      intronic chr1:93982658(+) A-I      intronic chr1:93938248(+) A-I      intronic chr1:93951440(+) A-I      intronic chr1:93922322(+) A-I      intronic chr1:93969977(+) A-I      intronic chr1:94007821(+) A-I      intronic chr1:93935827(+) A-I      intronic chr1:93985278(+) A-I      intronic chr1:94007712(+) A-I      intronic chr1:93917321(+) A-I      intronic chr1:93922113(+) A-I      intronic chr1:93920907(+) A-I      intronic chr1:93922584(+) A-I      intronic chr1:93917326(+) A-I      intronic chr1:93973225(+) A-I      intronic chr1:93923961(+) A-I      intronic chr1:93982823(+) A-I      intronic chr1:93956742(+) A-I      intronic chr1:93986385(+) A-I      intronic chr1:93933411(+) A-I      intronic chr1:93973345(+) A-I      intronic chr1:93985260(+) A-I      intronic chr1:93973371(+) A-I      intronic chr1:93948600(+) A-I      intronic chr1:93949746(+) A-I      intronic chr1:93951454(+) A-I      intronic chr1:93951273(+) A-I      intronic chr1:94008358(+) A-I      intronic chr1:93982837(+) A-I      intronic chr1:93923967(+) A-I      intronic chr1:93935895(+) A-I      intronic chr1:93936980(+) A-I      intronic chr1:93922718(+) A-I      intronic chr1:93986479(+) A-I      intronic chr1:93982243(+) A-I      intronic chr1:94007735(+) A-I      intronic chr1:93982701(+) A-I      intronic chr1:94008458(+) A-I      intronic chr1:93950519(+) A-I      intronic chr1:93963451(+) A-I      intronic chr1:93940937(+) A-I      intronic chr1:93985230(+) A-I      intronic chr1:93982740(+) A-I      intronic chr1:93950449(+) A-I      intronic chr1:94008421(+) A-I      intronic chr1:94008571(+) A-I      intronic chr1:93982792(+) A-I      intronic chr1:94007837(+) A-I      intronic chr1:94007772(+) A-I      intronic chr1:93982996(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FNBP1L	chr1:93913731-93913732(+) m6A 5'UTR       25456834 chr1:93913775-93913776(+) m6A 5'UTR       24981863 chr1:93913795-93913796(+) m6A 5'UTR       24981863 chr1:93913803-93913804(+) m6A 5'UTR       24981863 chr1:93981874-93981875(+) Gm intron       - chr1:93988957-93988958(+) m6A CDS       24981863 chr1:93989033-93989034(+) m6A CDS       24981863//27773535 chr1:93989867-93989868(+) m6A CDS       24981863//27773535//22575960 chr1:93996316-93996317(+) m6A CDS       24981863//27773535 chr1:93996384-93996385(+) m6A CDS       27773535 chr1:94000383-94000384(+) m6A CDS       24981863//27773535 chr1:94000411-94000412(+) m6A CDS       24981863//27773535 chr1:94009701-94009702(+) m6A CDS//exon       24981863//27773535//22608085 chr1:94009716-94009717(+) m6A CDS//exon       24981863//27773535//22608085 chr1:94009737-94009738(+) m6A CDS//exon       24981863//27773535//22608085 chr1:94009749-94009750(+) m6A CDS//exon       24981863//27773535//22608085 chr1:94009766-94009767(+) m6A CDS//exon       24981863//27773535//22608085 chr1:94012483-94012484(+) m6A CDS//exon       24981863//27773535//22608085 chr1:94012930-94012931(+) m6A CDS//exon       24981863//27773535 chr1:94012946-94012947(+) m6A CDS//exon       24981863//27773535 chr1:94012953-94012954(+) m6A CDS//exon       24981863//27773535 chr1:94014863-94014864(+) m6A CDS//exon       24981863//27773535 chr1:94014954-94014955(+) m6A CDS       27773535 chr1:94016563-94016564(+) m6A CDS       27773535 chr1:94016580-94016581(+) m6A CDS       27773535 chr1:94016594-94016595(+) m6A CDS       27773535 chr1:94016595-94016596(+) Cm CDS       - chr1:94016653-94016654(+) m6A CDS       27773535 chr1:94016682-94016683(+) m6A 3'UTR//intron       27773535 chr1:94018633-94018634(+) m6A 3'UTR       24284625//24981863 chr1:94018663-94018664(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr1:94018698-94018699(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:94018775-94018776(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr1:94018801-94018802(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr1:94018808-94018809(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr1:94018852-94018853(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr1:94019038-94019039(+) m6A 3'UTR       24981863 chr1:94019045-94019046(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FNBP1L	Cytosol K562 cells     - Exosome Blood     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: FNBP1L

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg