Detail Information

Basic Information:


  VIRBase ID:  

VHID00098198

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:           DCAF8:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H6-3p DCAF8
miRBase
Accession/Entrez ID		 MIMAT0008404 50717
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - GAN2//H326//WDR42A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DCAF8
chr1:160225175(-) A-I      intronic
chr1:160225637(-) A-I      intronic
chr1:160227697(-) A-I      intronic
chr1:160227714(-) A-I      intronic
chr1:160200634(-) A-I      intronic
chr1:160200650(-) A-I      intronic
chr1:160214621(-) A-I      intronic
chr1:160200721(-) A-I      intronic
chr1:160200717(-) A-I      intronic
chr1:160200690(-) A-I      intronic
chr1:160200657(-) A-I      intronic
chr1:160214636(-) A-I      intronic
chr1:160225548(-) A-I      intronic
chr1:160225525(-) A-I      intronic
chr1:160224554(-) A-I      intronic
chr1:160205099(-) A-I      intronic
chr1:160224536(-) A-I      intronic
chr1:160224498(-) A-I      intronic
chr1:160224413(-) A-I      intronic
chr1:160224110(-) A-I      intronic
chr1:160224068(-) A-I      intronic
chr1:160224066(-) A-I      intronic
chr1:160205072(-) A-I      intronic
chr1:160224036(-) A-I      intronic
chr1:160223946(-) A-I      intronic
chr1:160210770(-) A-I      intronic
chr1:160223907(-) A-I      intronic
chr1:160223119(-) A-I      intronic
chr1:160221554(-) A-I      intronic
chr1:160221482(-) A-I      intronic
chr1:160221414(-) A-I      intronic
chr1:160228501(-) A-I      intronic
chr1:160221303(-) A-I      intronic
chr1:160228489(-) A-I      intronic
chr1:160220217(-) A-I      intronic
chr1:160220037(-) A-I      intronic
chr1:160228476(-) A-I      intronic
chr1:160218632(-) A-I      intronic
chr1:160218601(-) A-I      intronic
chr1:160215757(-) A-I      intronic
chr1:160228360(-) A-I      intronic
chr1:160214536(-) A-I      intronic
chr1:160200839(-) A-I      intronic
chr1:160228347(-) A-I      intronic
chr1:160228042(-) A-I      intronic
chr1:160227934(-) A-I      intronic
chr1:160227920(-) A-I      intronic
chr1:160227919(-) A-I      intronic
chr1:160210911(-) A-I      intronic
chr1:160227915(-) A-I      intronic
chr1:160227894(-) A-I      intronic
chr1:160210790(-) A-I      intronic
chr1:160200782(-) A-I      intronic
chr1:160227880(-) A-I      intronic
chr1:160227756(-) A-I      intronic
chr1:160227690(-) A-I      intronic
chr1:160210773(-) A-I      intronic
chr1:160227684(-) A-I      intronic
chr1:160210711(-) A-I      intronic
chr1:160227680(-) A-I      intronic
chr1:160199567(-) A-I      intronic
chr1:160198993(-) A-I      intronic
chr1:160227669(-) A-I      intronic
chr1:160227606(-) A-I      intronic
chr1:160200702(-) A-I      intronic
chr1:160199084(-) A-I      intronic
chr1:160199800(-) A-I      intronic
chr1:160225613(-) A-I      intronic
chr1:160225609(-) A-I      intronic
chr1:160224030(-) A-I      intronic
chr1:160225554(-) A-I      intronic
chr1:160199080(-) A-I      intronic
chr1:160198962(-) A-I      intronic
chr1:160225564(-) A-I      intronic
chr1:160225558(-) A-I      intronic
chr1:160199607(-) A-I      intronic
chr1:160227916(-) A-I      intronic
chr1:160201778(-) A-I      intronic
chr1:160227769(-) A-I      intronic
chr1:160225203(-) A-I      intronic
chr1:160197936(-) A-I      intronic
chr1:160228502(-) A-I      intronic
chr1:160224325(-) A-I      intronic
chr1:160216400(-) A-I      intronic
chr1:160225938(-) A-I      intronic
chr1:160205666(-) A-I      intronic
chr1:160201833(-) A-I      intronic
chr1:160199731(-) A-I      intronic
chr1:160225170(-) A-I      intronic
chr1:160202044(-) A-I      intronic
chr1:160224465(-) A-I      intronic
chr1:160224402(-) A-I      intronic
chr1:160193470(-) A-I      intronic
chr1:160225196(-) A-I      intronic
chr1:160224577(-) A-I      intronic
chr1:160228037(-) A-I      intronic
chr1:160214608(-) A-I      intronic
chr1:160227539(-) A-I      intronic
chr1:160199766(-) A-I      intronic
chr1:160227727(-) A-I      intronic
chr1:160221325(-) A-I      intronic
chr1:160223125(-) A-I      intronic
chr1:160200823(-) A-I      intronic
chr1:160210698(-) A-I      intronic
chr1:160225915(-) A-I      intronic
chr1:160228359(-) A-I      intronic
chr1:160203082(-) A-I      intronic
chr1:160214671(-) A-I      intronic
chr1:160224470(-) A-I      intronic
chr1:160215746(-) A-I      intronic
chr1:160225125(-) A-I      intronic
chr1:160224389(-) A-I      intronic
chr1:160218095(-) A-I      intronic
chr1:160214672(-) A-I      intronic
chr1:160215930(-) A-I      intronic
chr1:160213307(-) A-I      intronic
chr1:160223088(-) A-I      intronic
chr1:160205088(-) A-I      intronic
chr1:160202546(-) A-I      intronic
chr1:160227636(-) A-I      intronic
chr1:160197293(-) A-I      intronic
chr1:160195758(-) A-I      intronic
chr1:160210710(-) A-I      intronic
chr1:160221371(-) A-I      intronic
chr1:160199595(-) A-I      intronic
chr1:160214471(-) A-I      intronic
chr1:160228015(-) A-I      intronic
chr1:160227659(-) A-I      intronic
chr1:160200715(-) A-I      intronic
chr1:160200778(-) A-I      intronic
chr1:160227642(-) A-I      intronic
chr1:160227738(-) A-I      intronic
chr1:160229223(-) A-I      intronic
chr1:160199072(-) A-I      intronic
chr1:160229143(-) A-I      intronic
chr1:160214604(-) A-I      intronic
chr1:160224547(-) A-I      intronic
chr1:160198872(-) A-I      intronic
chr1:160205137(-) A-I      intronic
chr1:160227815(-) A-I      intronic
chr1:160225691(-) A-I      intronic
chr1:160228299(-) A-I      intronic
chr1:160216705(-) A-I      intronic
chr1:160198860(-) A-I      intronic
chr1:160224416(-) A-I      intronic
chr1:160216667(-) A-I      intronic
chr1:160200665(-) A-I      intronic
chr1:160225909(-) A-I      intronic
chr1:160228443(-) A-I      intronic
chr1:160221335(-) A-I      intronic
chr1:160201938(-) A-I      intronic
chr1:160198921(-) A-I      intronic
chr1:160214666(-) A-I      intronic
chr1:160214546(-) A-I      intronic
chr1:160229068(-) A-I      intronic
chr1:160187078(-) A-I      3'UTR
chr1:160205094(-) A-I      intronic
chr1:160214593(-) A-I      intronic
chr1:160227540(-) A-I      intronic
chr1:160228389(-) A-I      intronic
chr1:160216681(-) A-I      intronic
chr1:160225916(-) A-I      intronic
chr1:160221532(-) A-I      intronic
chr1:160205198(-) A-I      intronic
chr1:160225445(-) A-I      intronic
chr1:160221401(-) A-I      intronic
chr1:160201777(-) A-I      intronic
chr1:160201746(-) A-I      intronic
chr1:160225197(-) A-I      intronic
chr1:160185788(-) A-I      3'UTR
chr1:160224327(-) A-I      intronic
chr1:160227688(-) A-I      intronic
chr1:160217539(-) A-I      intronic
chr1:160227770(-) A-I      intronic
chr1:160218608(-) A-I      intronic
chr1:160199624(-) A-I      intronic
chr1:160205117(-) A-I      intronic
chr1:160223073(-) A-I      intronic
chr1:160213309(-) A-I      intronic
chr1:160221531(-) A-I      intronic
chr1:160198924(-) A-I      intronic
chr1:160201953(-) A-I      intronic
chr1:160225893(-) A-I      intronic
chr1:160200777(-) A-I      intronic
chr1:160202309(-) A-I      intronic
chr1:160225472(-) A-I      intronic
chr1:160221378(-) A-I      intronic
chr1:160201776(-) A-I      intronic
chr1:160211789(-) A-I      intronic
chr1:160201917(-) A-I      intronic
chr1:160199767(-) A-I      intronic
chr1:160216338(-) A-I      intronic
chr1:160224358(-) A-I      intronic
chr1:160205693(-) A-I      intronic
chr1:160216445(-) A-I      intronic
chr1:160201736(-) A-I      intronic
chr1:160225848(-) A-I      intronic
chr1:160199730(-) A-I      intronic
chr1:160228055(-) A-I      intronic
chr1:160227971(-) A-I      intronic
chr1:160227970(-) A-I      intronic
chr1:160198904(-) A-I      intronic
chr1:160223968(-) A-I      intronic
chr1:160199615(-) A-I      intronic
chr1:160229140(-) A-I      intronic
chr1:160197929(-) A-I      intronic
chr1:160225574(-) A-I      intronic
chr1:160201888(-) A-I      intronic
chr1:160225199(-) A-I      intronic
chr1:160211845(-) A-I      intronic
chr1:160228129(-) A-I      intronic
chr1:160227902(-) A-I      intronic
chr1:160227700(-) A-I      intronic
chr1:160195744(-) A-I      intronic
chr1:160228503(-) A-I      intronic
chr1:160207415(-) A-I      intronic
chr1:160202551(-) A-I      intronic
chr1:160201789(-) A-I      intronic
chr1:160221504(-) A-I      intronic
chr1:160221509(-) A-I      intronic
chr1:160200741(-) A-I      intronic
chr1:160227679(-) A-I      intronic
chr1:160201724(-) A-I      intronic
chr1:160221360(-) A-I      intronic
chr1:160223136(-) A-I      intronic
chr1:160201964(-) A-I      intronic
chr1:160229222(-) A-I      intronic
chr1:160225538(-) A-I      intronic
chr1:160205204(-) A-I      intronic
chr1:160217554(-) A-I      intronic
chr1:160225682(-) A-I      intronic
chr1:160227703(-) A-I      intronic
chr1:160224049(-) A-I      intronic
chr1:160221495(-) A-I      intronic
chr1:160224466(-) A-I      intronic
chr1:160223034(-) A-I      intronic
chr1:160203095(-) A-I      intronic
chr1:160200816(-) A-I      intronic
chr1:160201924(-) A-I      intronic
chr1:160205097(-) A-I      intronic
chr1:160223056(-) A-I      intronic
chr1:160200627(-) A-I      intronic
chr1:160216703(-) A-I      intronic
chr1:160221422(-) A-I      intronic
chr1:160221485(-) A-I      intronic
chr1:160203120(-) A-I      intronic
chr1:160228540(-) A-I      intronic
chr1:160200666(-) A-I      intronic
chr1:160195656(-) A-I      intronic
chr1:160221365(-) A-I      intronic
chr1:160200680(-) A-I      intronic
chr1:160201869(-) A-I      intronic
chr1:160228025(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DCAF8
chr1:160185788(-) A-I exon 3'UTR    19478186
chr1:160224547(-) A-I intron -    21960545
chr1:160228443(-) A-I intron -    21960545
chr1:160228489(-) A-I intron -    21960545
chr1:160198872(-) A-G intron -    22484847
chr1:160199595(-) A-G intron -    22484847
chr1:160199615(-) A-G intron -    22484847
chr1:160199730(-) A-G intron -    22484847
chr1:160199731(-) A-G intron -    22484847
chr1:160199767(-) A-G intron -    22484847
chr1:160200665(-) A-G intron -    22484847
chr1:160200741(-) A-G intron -    22484847
chr1:160200778(-) A-G intron -    22484847
chr1:160200823(-) A-G intron -    22484847
chr1:160205198(-) A-G intron -    22484847
chr1:160207325(-) G-A intron -    22484847
chr1:160210698(-) A-G intron -    22484847
chr1:160210710(-) A-G intron -    22484847
chr1:160213309(-) A-G intron -    22484847
chr1:160214546(-) A-G intron -    22484847
chr1:160214604(-) A-G intron -    22484847
chr1:160214671(-) A-G intron -    22484847
chr1:160214672(-) A-G intron -    22484847
chr1:160216667(-) A-G intron -    22484847
chr1:160216681(-) A-G intron -    22484847
chr1:160218095(-) A-G intron -    22484847
chr1:160221325(-) A-G intron -    22484847
chr1:160221335(-) A-G intron -    22484847
chr1:160221365(-) A-G intron -    22484847
chr1:160221371(-) A-G intron -    22484847
chr1:160221378(-) A-G intron -    22484847
chr1:160221401(-) A-G intron -    22484847
chr1:160221485(-) A-G intron -    22484847
chr1:160221509(-) A-G intron -    22484847
chr1:160223968(-) A-G intron -    22484847
chr1:160224389(-) A-G intron -    22484847
chr1:160224416(-) A-G intron -    22484847
chr1:160224465(-) A-G intron -    22484847
chr1:160224466(-) A-G intron -    22484847
chr1:160224547(-) A-G intron -    22484847
chr1:160225125(-) A-G intron -    22484847
chr1:160225170(-) A-G intron -    22484847
chr1:160225196(-) A-G intron -    22484847
chr1:160225197(-) A-G intron -    22484847
chr1:160225199(-) A-G intron -    22484847
chr1:160225203(-) A-G intron -    22484847
chr1:160225893(-) A-G intron -    22484847
chr1:160225909(-) A-G intron -    22484847
chr1:160225938(-) A-G intron -    22484847
chr1:160227636(-) A-G intron -    22484847
chr1:160227659(-) A-G intron -    22484847
chr1:160227679(-) A-G intron -    22484847
chr1:160227688(-) A-G intron -    22484847
chr1:160227700(-) A-G intron -    22484847
chr1:160227703(-) A-G intron -    22484847
chr1:160227727(-) A-G intron -    22484847
chr1:160227738(-) A-G intron -    22484847
chr1:160227769(-) A-G intron -    22484847
chr1:160227770(-) A-G intron -    22484847
chr1:160227902(-) A-G intron -    22484847
chr1:160227916(-) A-G intron -    22484847
chr1:160227970(-) A-G intron -    22484847
chr1:160227971(-) A-G intron -    22484847
chr1:160228015(-) A-G intron -    22484847
chr1:160228359(-) A-G intron -    22484847
chr1:160228547(-) T-A intron -    22484847
chr1:160229068(-) A-G intron -    22484847
chr1:160229140(-) A-G intron -    22484847
chr1:160229143(-) A-G intron -    22484847
chr1:160229222(-) A-G intron -    22484847
chr1:160229223(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DCAF8
chr1:160185564-160185565(-) m6A 3'UTR       27773535
chr1:160186618-160186619(-) m6A 3'UTR       -
chr1:160187013-160187014(-) m6A 3'UTR//intron       27773535
chr1:160187154-160187155(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:160187221-160187222(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:160187238-160187239(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:160187254-160187255(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:160187279-160187280(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:160187433-160187434(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:160187460-160187461(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:160187486-160187487(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828
chr1:160187644-160187645(-) m6A exon//intron       24284625//24209618//24981863//27773535//27371828
chr1:160187653-160187654(-) m6A exon//intron       24284625//24981863//27773535//27371828
chr1:160188131-160188132(-) m6A 3'UTR//CDS//exon//intron       24284625//27371828
chr1:160188181-160188182(-) m6A 3'UTR//CDS//exon//intron       24284625
chr1:160188216-160188217(-) m6A 3'UTR//CDS//exon//intron       24284625
chr1:160188702-160188703(-) m6A 3'UTR//CDS//exon//intron       24284625
chr1:160188753-160188754(-) m6A 3'UTR//CDS//exon//intron       24284625
chr1:160188808-160188809(-) m6A exon//intron       24284625
chr1:160190321-160190322(-) m6A 3'UTR//exon//intron       -
chr1:160192453-160192454(-) m6A 3'UTR//CDS//exon       24284625
chr1:160194311-160194312(-) m6A CDS//exon       -
chr1:160209048-160209049(-) m6A 3'UTR//intron       27773535
chr1:160209104-160209105(-) m6A 3'UTR//intron       27773535
chr1:160209199-160209200(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr1:160209204-160209205(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr1:160209291-160209292(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:160209325-160209326(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:160209371-160209372(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:160209426-160209427(-) m6A CDS//intron       24284625//24981863//27773535//22575960//22608085
chr1:160209520-160209521(-) m6A CDS       24284625//24981863//26404942//27773535//22575960//22608085
chr1:160209716-160209717(-) Y CDS       26075521
chr1:160209779-160209780(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:160209796-160209797(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:160209826-160209827(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:160209961-160209962(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:160209979-160209980(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:160210006-160210007(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:160210075-160210076(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:160210106-160210107(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:160213760-160213761(-) m6A CDS//intron       27773535
chr1:160213764-160213765(-) m6A CDS//intron       24284625//24209618//27773535//27371828//22575960
chr1:160213809-160213810(-) m6A 5'UTR//intron       24284625//24209618//27773535//27371828//22575960
chr1:160231128-160231129(-) m6A 5'UTR//intron       24284625//27773535//27371828
chr1:160231183-160231184(-) m6A 5'UTR//intron       24284625
chr1:160232090-160232091(-) m6A 5'UTR//intron       24284625//24981863//27371828//27773536
chr1:160232184-160232185(-) m6A 5'UTR//intron       24284625//24981863//27371828
chr1:160247698-160247699(-) Y intron       26075521
chr1:160247710-160247711(-) Y intron       26075521
chr1:160251874-160251875(-) Y CDS       26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DCAF8
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H6-3p
Interactor2: DCAF8

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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