Basic Information:

  VIRBase ID:  

VHID00098162

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          REPIN1:  NM_001362745     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	REPIN1
miRBase Accession/Entrez ID	MIMAT0008404	29803
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AP4//RIP60//Zfp464//ZNF464

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	REPIN1	chr7:150071129(+) C-A intron -    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	REPIN1	chr7:150065381-150065382(+) m6A 5'UTR//exon       24981863 chr7:150065918-150065919(+) m6A 5'UTR//exon//intron       24981863 chr7:150065924-150065925(+) m6A 5'UTR//exon//intron       24981863 chr7:150066492-150066493(+) m6A exon//intron       - chr7:150066556-150066557(+) m6A exon//intron       - chr7:150066903-150066904(+) m6A 3'UTR//5'UTR//CDS//exon//intron       24284625 chr7:150066986-150066987(+) m6A exon//intron       24284625//25456834 chr7:150067268-150067269(+) m6A exon//intron       24284625//25456834 chr7:150067301-150067302(+) m6A exon//intron       25456834 chr7:150067313-150067314(+) m6A exon//intron       25456834 chr7:150068264-150068265(+) m6A 5'UTR//intron       24284625//25456834 chr7:150068326-150068327(+) m6A 3'UTR//5'UTR//CDS//exon       24284625//25456834 chr7:150068417-150068418(+) m6A 3'UTR//CDS//exon       24284625 chr7:150068667-150068668(+) m6A 3'UTR//CDS       24284625//24981863//22575960//22608085 chr7:150068898-150068899(+) m6A 3'UTR//CDS       24284625//25456834//24981863//26404942//22575960//22608085 chr7:150069241-150069242(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr7:150069379-150069380(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr7:150069426-150069427(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr7:150069561-150069562(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr7:150069742-150069743(+) m6A 3'UTR//CDS       24284625//22575960 chr7:150069980-150069981(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr7:150070000-150070001(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr7:150070019-150070020(+) m1A 3'UTR//CDS       26863196 chr7:150070132-150070133(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr7:150070221-150070222(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr7:150070363-150070364(+) m6A 3'UTR       24284625 chr7:150070421-150070422(+) Am 3'UTR       - chr7:150070492-150070493(+) m6A 3'UTR       24284625 chr7:150070510-150070511(+) m6A 3'UTR       24284625 chr7:150070604-150070605(+) m6A 3'UTR       24284625//22575960 chr7:150070614-150070615(+) m6A 3'UTR       24284625//22575960 chr7:150070768-150070769(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr7:150070820-150070821(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr7:150070897-150070898(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:150070933-150070934(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr7:150071065-150071066(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr7:150071070-150071071(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr7:150071075-150071076(+) m6A 3'UTR       24284625 chr7:150071100-150071101(+) m6A 3'UTR       24284625 chr7:150071127-150071128(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	REPIN1	Chromatin K562 cells     - Endoplasmic reticulum COS-7 cells     24019514 Exosome Blood     - Nucleolus K562 cells     - Nucleus COS-7 cells     24019514 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: REPIN1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg