Basic Information:

  VIRBase ID:  

VHID00098126

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          RND1:  NM_014470     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	RND1
miRBase Accession/Entrez ID	MIMAT0008404	27289
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARHS//RHO6//RHOS

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RND1	chr12:49253978(-) A-I      intronic chr12:49254179(-) A-I      intronic chr12:49253788(-) A-I      intronic chr12:49253737(-) A-I      intronic chr12:49253036(-) A-I      intronic chr12:49253924(-) A-I      intronic chr12:49252962(-) A-I      intronic chr12:49252937(-) A-I      intronic chr12:49252779(-) A-I      intronic chr12:49252880(-) A-I      intronic chr12:49253453(-) A-I      intronic chr12:49253110(-) A-I      intronic chr12:49254139(-) A-I      intronic chr12:49252961(-) A-I      intronic chr12:49253516(-) A-I      intronic chr12:49254379(-) A-I      intronic chr12:49253497(-) A-I      intronic chr12:49252597(-) A-I      intronic chr12:49253201(-) A-I      intronic chr12:49253411(-) A-I      intronic chr12:49254247(-) A-I      intronic chr12:49253271(-) A-I      intronic chr12:49252741(-) A-I      intronic chr12:49253586(-) A-I      intronic chr12:49253156(-) A-I      intronic chr12:49254138(-) A-I      intronic chr12:49252946(-) A-I      intronic chr12:49252337(-) A-I      intronic chr12:49254456(-) A-I      intronic chr12:49253549(-) A-I      intronic chr12:49254313(-) A-I      intronic chr12:49253413(-) A-I      intronic chr12:49252605(-) A-I      intronic chr12:49253096(-) A-I      intronic chr12:49252372(-) A-I      intronic chr12:49253607(-) A-I      intronic chr12:49253179(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RND1	chr12:49252337(-) A-I intron -    15342557 chr12:49252605(-) A-I intron -    15342557 chr12:49252880(-) A-I intron -    15342557 chr12:49252937(-) A-I intron -    15342557 chr12:49252946(-) A-I intron -    15342557 chr12:49252961(-) A-I intron -    15342557 chr12:49252962(-) A-I intron -    15342557 chr12:49252983(-) A-I intron -    15342557

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RND1	chr12:49250964-49250965(-) m6A 3'UTR//exon       27773535 chr12:49251037-49251038(-) m6A 3'UTR//exon       27773535 chr12:49251246-49251247(-) m6A 3'UTR//exon//intron       27773535 chr12:49251584-49251585(-) m6A 3'UTR//exon//intron       25456834//24981863//27773535//27371828//27773536//22608085 chr12:49251602-49251603(-) m6A 3'UTR//exon//intron       25456834//24981863//27773535//27371828//27773536//22608085 chr12:49251642-49251643(-) m6A 3'UTR//exon//intron       25456834//24981863//27773535//27371828//27773536//22608085 chr12:49251684-49251685(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr12:49251691-49251692(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr12:49251701-49251702(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr12:49251756-49251757(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr12:49251832-49251833(-) m6A CDS//exon       25456834//24981863//27371828//22608085 chr12:49251911-49251912(-) m6A CDS//exon       24981863 chr12:49258599-49258600(-) m6A 3'UTR//CDS       27773535 chr12:49258607-49258608(-) m6A 3'UTR//CDS       27773535 chr12:49259193-49259194(-) m6A 3'UTR//intron       27773535 chr12:49259247-49259248(-) m6A 3'UTR//intron       27773535 chr12:49259273-49259274(-) m6A CDS//intron       27773535 chr12:49259471-49259472(-) m6A CDS       27773535//27371828 chr12:49259560-49259561(-) m6A 5'UTR       25456834//24981863//27773535//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RND1	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: RND1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg