Basic Information:

  VIRBase ID:  

VHID00097167

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          SLC20A1:  NM_005415     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	SLC20A1
miRBase Accession/Entrez ID	MIMAT0008404	6574
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Glvr-1//GLVR1//PiT-1//PIT1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC20A1	chr2:113419230(+) A-I      intronic chr2:113419271(+) A-I      intronic chr2:113419252(+) A-I      intronic chr2:113412433(+) A-I      intronic chr2:113412312(+) A-I      intronic chr2:113412307(+) A-I      intronic chr2:113412276(+) A-I      intronic chr2:113412271(+) A-I      intronic chr2:113419942(+) A-I      intronic chr2:113419950(+) A-I      intronic chr2:113419975(+) A-I      intronic chr2:113419986(+) A-I      intronic chr2:113420001(+) A-I      intronic chr2:113420011(+) A-I      intronic chr2:113420122(+) A-I      intronic chr2:113419315(+) A-I      intronic chr2:113411434(+) A-I      intronic chr2:113411426(+) A-I      intronic chr2:113411447(+) A-I      intronic chr2:113411450(+) A-I      intronic chr2:113411473(+) A-I      intronic chr2:113411645(+) A-I      intronic chr2:113412224(+) A-I      intronic chr2:113412254(+) A-I      intronic chr2:113412285(+) A-I      intronic chr2:113412320(+) A-I      intronic chr2:113412327(+) A-I      intronic chr2:113412336(+) A-I      intronic chr2:113412353(+) A-I      intronic chr2:113412358(+) A-I      intronic chr2:113412369(+) A-I      intronic chr2:113412382(+) A-I      intronic chr2:113412476(+) A-I      intronic chr2:113413357(+) A-I      intronic chr2:113413394(+) A-I      intronic chr2:113413402(+) A-I      intronic chr2:113413530(+) A-I      intronic chr2:113413886(+) A-I      intronic chr2:113413903(+) A-I      intronic chr2:113413913(+) A-I      intronic chr2:113413923(+) A-I      intronic chr2:113413940(+) A-I      intronic chr2:113413952(+) A-I      intronic chr2:113413958(+) A-I      intronic chr2:113419909(+) A-I      intronic chr2:113411621(+) A-I      intronic chr2:113412820(+) A-I      intronic chr2:113413891(+) A-I      intronic chr2:113412808(+) A-I      intronic chr2:113412210(+) A-I      intronic chr2:113412620(+) A-I      intronic chr2:113412798(+) A-I      intronic chr2:113412418(+) A-I      intronic chr2:113419881(+) A-I      intronic chr2:113412701(+) A-I      intronic chr2:113412650(+) A-I      intronic chr2:113412729(+) A-I      intronic chr2:113412585(+) A-I      intronic chr2:113419394(+) A-I      intronic chr2:113412301(+) A-I      intronic chr2:113412423(+) A-I      intronic chr2:113419309(+) A-I      intronic chr2:113412330(+) A-I      intronic chr2:113413961(+) A-I      intronic chr2:113412822(+) A-I      intronic chr2:113412675(+) A-I      intronic chr2:113419278(+) A-I      intronic chr2:113412310(+) A-I      intronic chr2:113420127(+) A-I      intronic chr2:113412443(+) A-I      intronic chr2:113419187(+) A-I      intronic chr2:113412296(+) A-I      intronic chr2:113419130(+) A-I      intronic chr2:113419206(+) A-I      intronic chr2:113412768(+) A-I      intronic chr2:113419190(+) A-I      intronic chr2:113412295(+) A-I      intronic chr2:113412262(+) A-I      intronic chr2:113413874(+) A-I      intronic chr2:113412218(+) A-I      intronic chr2:113412219(+) A-I      intronic chr2:113412326(+) A-I      intronic chr2:113412610(+) A-I      intronic chr2:113419255(+) A-I      intronic chr2:113419226(+) A-I      intronic chr2:113412342(+) A-I      intronic chr2:113413432(+) A-I      intronic chr2:113419947(+) A-I      intronic chr2:113413837(+) A-I      intronic chr2:113412663(+) A-I      intronic chr2:113412829(+) A-I      intronic chr2:113412270(+) A-I      intronic chr2:113412286(+) A-I      intronic chr2:113413452(+) A-I      intronic chr2:113412743(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC20A1	chr2:113403599(+) A-I exon 5'UTR    19478186 chr2:113412798(+) A-I intron -    22327324 chr2:113412286(+) A-I intron -    21960545 chr2:113412820(+) A-I intron -    21960545 chr2:113411557(+) C-T intron -    22484847 chr2:113411643(+) A-G intron -    22484847 chr2:113412210(+) A-G intron -    22484847 chr2:113412218(+) A-G intron -    22484847 chr2:113412219(+) A-G intron -    22484847 chr2:113412262(+) A-G intron -    22484847 chr2:113412286(+) A-G intron -    22484847 chr2:113412295(+) A-G intron -    22484847 chr2:113412296(+) A-G intron -    22484847 chr2:113412301(+) A-G intron -    22484847 chr2:113412310(+) A-G intron -    22484847 chr2:113412311(+) A-G intron -    22484847 chr2:113412326(+) A-G intron -    22484847 chr2:113412330(+) A-G intron -    22484847 chr2:113412342(+) A-G intron -    22484847 chr2:113412393(+) A-G intron -    22484847 chr2:113412418(+) A-G intron -    22484847 chr2:113412585(+) A-G intron -    22484847 chr2:113412610(+) A-G intron -    22484847 chr2:113412650(+) A-G intron -    22484847 chr2:113412663(+) A-G intron -    22484847 chr2:113412711(+) A-G intron -    22484847 chr2:113412712(+) A-G intron -    22484847 chr2:113412726(+) A-G intron -    22484847 chr2:113412743(+) A-G intron -    22484847 chr2:113412798(+) A-G intron -    22484847 chr2:113412822(+) A-G intron -    22484847 chr2:113413891(+) A-G intron -    22484847 chr2:113419187(+) A-G intron -    22484847 chr2:113419226(+) A-G intron -    22484847 chr2:113419278(+) A-G intron -    22484847 chr2:113419326(+) A-G intron -    22484847 chr2:113419354(+) A-G intron -    22484847 chr2:113419394(+) A-G intron -    22484847 chr2:113419947(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC20A1	chr2:113403567-113403568(+) m6A 5'UTR       24284625//25456834//24981863//27371828//22575960 chr2:113404144-113404145(+) m6A 5'UTR       24284625//24981863//22575960 chr2:113404212-113404213(+) m6A 5'UTR       24284625//24981863 chr2:113404219-113404220(+) m6A 5'UTR       24284625//24981863 chr2:113416568-113416569(+) m6A 3'UTR//CDS//exon       22575960 chr2:113416582-113416583(+) m6A 3'UTR//CDS//exon       22575960 chr2:113416632-113416633(+) m6A 3'UTR//CDS//exon       22575960 chr2:113416646-113416647(+) m6A 3'UTR//CDS//exon       22575960 chr2:113416843-113416844(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//22575960//22608085 chr2:113416948-113416949(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr2:113416961-113416962(+) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr2:113417048-113417049(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr2:113417092-113417093(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr2:113417116-113417117(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr2:113417173-113417174(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr2:113420638-113420639(+) m6A 3'UTR//exon       24284625//24981863//26404942 chr2:113420691-113420692(+) m6A 3'UTR//exon       24981863//26404942 chr2:113421164-113421165(+) m6A 3'UTR//exon       27773535 chr2:113421317-113421318(+) m6A 3'UTR//exon       24981863//27773535 chr2:113421338-113421339(+) m6A 3'UTR//exon       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC20A1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: SLC20A1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg