Basic Information:

  VIRBase ID:  

VHID00097088

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          RGS16:  NM_002928     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	RGS16
miRBase Accession/Entrez ID	MIMAT0008404	6004
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	A28-RGS14//A28-RGS14P//RGS-R

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RGS16	chr1:182568168-182568169(-) m6A 3'UTR       24209618//25456834//27371828//22608085 chr1:182568221-182568222(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085 chr1:182568250-182568251(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//22608085 chr1:182568266-182568267(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//22608085 chr1:182568322-182568323(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//22608085 chr1:182568350-182568351(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085 chr1:182568418-182568419(-) m6A 3'UTR       24209618//22608085 chr1:182568948-182568949(-) m6A 3'UTR       25456834 chr1:182568969-182568970(-) m6A 3'UTR       24209618//25456834//22608085 chr1:182569038-182569039(-) m6A 3'UTR       24209618//25456834//24981863//22608085 chr1:182569062-182569063(-) m6A 3'UTR       24209618//25456834//24981863//28052920//22608085 chr1:182569079-182569080(-) m6A 3'UTR       24209618//25456834//24981863//28052920//27371828//22608085 chr1:182569203-182569204(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr1:182569236-182569237(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr1:182569318-182569319(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085 chr1:182569499-182569500(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085 chr1:182569538-182569539(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085 chr1:182569560-182569561(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085 chr1:182569599-182569600(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085 chr1:182569607-182569608(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085 chr1:182569629-182569630(-) m6A CDS       24284625//24981863//27371828//27773536//22608085 chr1:182571215-182571216(-) m6A CDS       27371828//27773536 chr1:182571234-182571235(-) m6A CDS       27371828//27773536 chr1:182571613-182571614(-) m6A CDS       27371828 chr1:182572377-182572378(-) m6A CDS       27371828 chr1:182572457-182572458(-) m6A CDS       - chr1:182573507-182573508(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RGS16	Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: RGS16

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg