Basic Information:

  VIRBase ID:  

VHID00096661

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          GNB2:  NM_005273     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	GNB2
miRBase Accession/Entrez ID	MIMAT0008404	2783
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GNB2	chr7:100271197-100271198(+) m6A 5'UTR       24981863 chr7:100271239-100271240(+) m6A 5'UTR//intron       24981863 chr7:100271491-100271492(+) m6A 5'UTR//intron       24209618//25456834//24981863//27773536 chr7:100273911-100273912(+) m6A CDS//exon//intron       24284625//24209618 chr7:100273934-100273935(+) m6A CDS//exon//intron       24284625//24209618 chr7:100274179-100274180(+) m6A 5'UTR//CDS//exon//intron       24284625//24209618 chr7:100274331-100274332(+) m6A 5'UTR//CDS//exon//intron       24284625//24209618 chr7:100274357-100274358(+) m6A CDS//exon//intron       24284625 chr7:100274366-100274367(+) m6A CDS//exon//intron       24284625 chr7:100274411-100274412(+) m6A CDS//exon//intron       24284625 chr7:100274889-100274890(+) m6A exon//intron       - chr7:100275018-100275019(+) m6A 5'UTR//CDS//exon//intron       24284625 chr7:100275181-100275182(+) m6A CDS//exon       24284625//22575960 chr7:100275205-100275206(+) m6A CDS//exon       24284625//22575960 chr7:100275234-100275235(+) m6A CDS//exon       24284625//22575960 chr7:100275348-100275349(+) m6A exon//intron       24284625//22575960 chr7:100275731-100275732(+) m6A CDS//exon       22575960 chr7:100275739-100275740(+) m6A CDS//exon       22575960 chr7:100275751-100275752(+) m6A CDS//exon       22575960 chr7:100275768-100275769(+) m6A CDS//exon       22575960 chr7:100275883-100275884(+) m6A CDS//exon       22575960 chr7:100276398-100276399(+) m6A CDS//exon       22575960 chr7:100276409-100276410(+) Am CDS//exon       - chr7:100276419-100276420(+) m6A CDS//exon       22575960 chr7:100276701-100276702(+) m6A 3'UTR//exon       - chr7:100276725-100276726(+) m6A 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GNB2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: GNB2

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg