Basic Information:

  VIRBase ID:  

VHID00096338

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H6-3p:  MIMAT0008404          ARF5:  NM_001662     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H6-3p	ARF5
miRBase Accession/Entrez ID	MIMAT0008404	381
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARF5	chr7:127228597-127228598(+) m1A CDS//exon       26863410 chr7:127228646-127228647(+) m6A exon//intron       22575960 chr7:127229159-127229160(+) m6A CDS//exon       - chr7:127229176-127229177(+) m6A CDS//exon       - chr7:127229552-127229553(+) m6A CDS//exon       26404942 chr7:127229568-127229569(+) m6A CDS//exon       26404942 chr7:127229604-127229605(+) m6A CDS//exon       22575960 chr7:127229640-127229641(+) m6A CDS//exon       22575960 chr7:127229666-127229667(+) m6A exon//intron       22575960 chr7:127230138-127230139(+) m6A CDS//exon       - chr7:127230178-127230179(+) m6A CDS//exon       - chr7:127231071-127231072(+) m6A CDS//exon       - chr7:127231321-127231322(+) m6A CDS//exon       - chr7:127231413-127231414(+) m6A 3'UTR//exon       - chr7:127231421-127231422(+) m6A 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARF5	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H6-3p
Interactor2: ARF5

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg