Basic Information:

  VIRBase ID:  

VHID00095976

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H5-3p:  MIMAT0008403          SYPL2:  NM_001040709     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H5-3p	SYPL2
miRBase Accession/Entrez ID	MIMAT0008403	284612
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MG29

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SYPL2	chr1:110014851(+) A-I      intronic chr1:110015313(+) A-I      intronic chr1:110014868(+) A-I      intronic chr1:110016505(+) A-I      intronic chr1:110014896(+) A-I      intronic chr1:110016462(+) A-I      intronic chr1:110014967(+) A-I      intronic chr1:110016413(+) A-I      intronic chr1:110016351(+) A-I      intronic chr1:110016257(+) A-I      intronic chr1:110012661(+) A-I      intronic chr1:110015295(+) A-I      intronic chr1:110012709(+) A-I      intronic chr1:110015289(+) A-I      intronic chr1:110015422(+) A-I      intronic chr1:110012736(+) A-I      intronic chr1:110012474(+) A-I      intronic chr1:110012714(+) A-I      intronic chr1:110015303(+) A-I      intronic chr1:110014880(+) A-I      intronic chr1:110012622(+) A-I      intronic chr1:110015376(+) A-I      intronic chr1:110012316(+) A-I      intronic chr1:110016480(+) A-I      intronic chr1:110012696(+) A-I      intronic chr1:110012722(+) A-I      intronic chr1:110023574(+) A-I      3'UTR chr1:110015351(+) A-I      intronic chr1:110012695(+) A-I      intronic chr1:110016394(+) A-I      intronic chr1:110014770(+) A-I      intronic chr1:110016396(+) A-I      intronic chr1:110016467(+) A-I      intronic chr1:110012404(+) A-I      intronic chr1:110014786(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SYPL2	chr1:110012622(+) A-G intron -    22484847 chr1:110012696(+) A-G intron -    22484847 chr1:110014770(+) A-G intron -    22484847 chr1:110014880(+) A-G intron -    22484847 chr1:110015303(+) A-G intron -    22484847 chr1:110016394(+) A-G intron -    22484847 chr1:110016396(+) A-G intron -    22484847 chr1:110016467(+) A-G intron -    22484847 chr1:110016480(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SYPL2	chr1:110022059-110022060(+) m6A CDS       25456834//24981863//22608085 chr1:110022073-110022074(+) m6A CDS       25456834//24981863//22608085 chr1:110022090-110022091(+) m6A CDS       25456834//24981863//22608085 chr1:110022096-110022097(+) m6A CDS       25456834//24981863//22608085 chr1:110022102-110022103(+) m6A CDS       25456834//24981863//22608085 chr1:110022108-110022109(+) m6A CDS       25456834//24981863//22608085 chr1:110022196-110022197(+) m6A 3'UTR       25456834//22608085 chr1:110022201-110022202(+) m6A 3'UTR       25456834//22608085 chr1:110022234-110022235(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SYPL2	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H5-3p
Interactor2: SYPL2

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg